Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04447 ATGGAGGAGGAAGGTGAAATATACGATGGTGTTCGAGCTCAATTCCCTCTTTCCTTCGGCAAGCAAACCAAATCTCAAACTTCTCTCGAAGTAATCCACAACGCTACTCGTCGCACTTCCAATTCCAATTCCAAAACCACCACCGATTTTCCTTCTCTCTCTTCTTCTTCCAAGGAATGGCTCAAATCCCTTCGTCCCTCCAAAAACCCTACCCCTCCCCCGCCCCAACCGGATGAAGAAGACGATGGCCCCCTCGTGGGACCCCCTCCGCCACCCTCCCGATCGGGTCCCGAAAATCACGACGACGGCGAGATGATTGGCCCTCCCCCGCCGCCTCCGAGAGATTCTGACTCAGAAGACGATTCCGATCAAACCGAGTTGGGGAACCGGTTCCGGATTCCCCTTACCAACGAGATTGTGCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCACACTGGATCTAGAGTGCTTTCTGGAAGTTATGACTATTCAGTACGCATGTATGACTTTCAAGGAATGAATGCTAGTTTGCAATCGTTTCGACAACTGGAGCCATTTGAAGGGCATCAAGTTCGCACTTTGAGTTGGAGTCCAACTGCTGATCGCTTTTTGTGTGTGACTGGATCAGCTCAAGCTAAGATTTATGATCGTGATGGACTCACTTTGGGAGAGTTTATGAAGGGAGACATGTATATCCGTGATCTAAAGAATACCAAAGGCCACATATCTGGATTGACTTGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAGGATGGGTCGCTACGCATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTGACCACATGTGCATGGGATCATGATGGTAAATGCATTTCTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAACCTGGATGGGGGAGTAGGCCAGATATACACATTGAAAAGTGTCATGAGGATGATATGACTTGTCTGAAATTTTCTAGTGATGGGAAAATCTTATTGTCAAGGAGCTTTGATGGTTCATTAAAGGTTTGGGATCTCCGTAAAACAAAGGAAGCGTTGAAGGTATTTGAGGATCTGCCAAATAACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTTACTGGAACATGTGTAGAAAAGGAGAGCTCAACGGGAGGTTTATTGTGCTTCTTTGATAGAGCAAATCTTGACCTTGTTTCAAGAGTTGGCATATCCCCTACCTGTAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCGCATACTATATGATCCAACCCTCAGTGAGAGAGGAGCTCTTGTTTGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAAGCAAAACCTGTGATTCACAATCCTCATGCCTTACCTCTATTTAGAGATCAGCCAAGCCGCAAGCGTCAACGAGAGAAAGTATTAAAGGACCCATTGAAGTCCCATAAGCCTGAACTACCCATAACAGGACCTGGCTTCGGTGGACGAGTTGGTGTTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTAAAATATGCTGATGCTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTGTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1839 0.4541 MEEEGEIYDGVRAQFPLSFGKQTKSQTSLEVIHNATRRTSNSNSKTTTDFPSLSSSSKEWLKSLRPSKNPTPPPPQPDEEDDGPLVGPPPPPSRSGPENHDDGEMIGPPPPPPRDSDSEDDSDQTELGNRFRIPLTNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYSVRMYDFQGMNASLQSFRQLEPFEGHQVRTLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDHDGKCISGGIGDGSIQIWSIKPGWGSRPDIHIEKCHEDDMTCLKFSSDGKILLSRSFDGSLKVWDLRKTKEALKVFEDLPNNYGQTNIAFSPDEQLFFTGTCVEKESSTGGLLCFFDRANLDLVSRVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTRILYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGVSQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04447 612 MobiDBLite consensus disorder prediction 18 131 - -
Seca2g04447 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 284 IPR001680 GO:0005515
Seca2g04447 612 ProSitePatterns Trp-Asp (WD) repeats signature. 262 276 IPR019775 -
Seca2g04447 612 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Seca2g04447 612 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Seca2g04447 612 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Seca2g04447 612 MobiDBLite consensus disorder prediction 67 96 - -
Seca2g04447 612 MobiDBLite consensus disorder prediction 18 64 - -
Seca2g04447 612 CDD WD40 140 459 - -
Seca2g04447 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Seca2g04447 612 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 378 IPR001680 GO:0005515
Seca2g04447 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 371 - -
Seca2g04447 612 FunFam WD repeat-containing protein 70 230 472 - -
Seca2g04447 612 FunFam Nucleotide binding protein 88 229 - -
Seca2g04447 612 MobiDBLite consensus disorder prediction 510 529 - -
Seca2g04447 612 SMART WD40_4 134 173 IPR001680 GO:0005515
Seca2g04447 612 SMART WD40_4 232 275 IPR001680 GO:0005515
Seca2g04447 612 SMART WD40_4 279 323 IPR001680 GO:0005515
Seca2g04447 612 SMART WD40_4 330 369 IPR001680 GO:0005515
Seca2g04447 612 SMART WD40_4 183 220 IPR001680 GO:0005515
Seca2g04447 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 175 - -
Seca2g04447 612 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 277 - -
Seca2g04447 612 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Seca2g04447 612 Pfam WD domain, G-beta repeat 337 369 IPR001680 GO:0005515
Seca2g04447 612 Pfam WD domain, G-beta repeat 297 323 IPR001680 GO:0005515
Seca2g04447 612 Pfam WD domain, G-beta repeat 139 173 IPR001680 GO:0005515
Seca2g04447 612 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 7 611 - -
Seca2g04447 612 SUPERFAMILY WD40 repeat-like 129 457 IPR036322 GO:0005515
Seca2g04447 612 MobiDBLite consensus disorder prediction 593 612 - -
Seca2g04447 612 Gene3D - 229 470 IPR015943 GO:0005515
Seca2g04447 612 Gene3D - 23 228 IPR015943 GO:0005515
Seca2g04447 612 MobiDBLite consensus disorder prediction 510 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04447 Seca-Chr2 129900318 129904765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04447 244 442 Miscellaneous Gene Families AT5G08390 23.500 5.74e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04447 K24752 - gmx:100815380 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04447 2 129900318 129904765 Seca2g04447 2 129900318 129904765 ECH