Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04438 ATGATGCTGAGAAGCTCTTCAACACCAGTTCTTGGTTCCCTCCTCTCTTCCTTCACAGATAGTCCTAATAATAGTGTTCACTCTGAAGCCTGCCATGCACCAAAGCATCTACCACCAACTAGTGTCCCCCAATATCACCACAAACGCTCTTTCCATCAACCTGGGTCCTTCACTCTTTCCCCTTTCTCATGCAGTTCTTCTCCAATTTCCCCTTCCATTGCTGACCTTGATAGGCAAAACAAAGGGTTTAGAAGAGTTCAATCTGAAGGGAACTTGGAGGATTTAGCCTACTCTTCTTGCAACAACAATGAAGACATATTAAACTATATAGATCCTCCCAAGAGGTTTTCAGGAAGACACAGATGCTTGGCACTGGAAACCATTCCATCTTTCTCAATTTCCAAGCACAGAGGCTTGCAGGTGGAAGAGGAAGATGAAGAAATGGAAAGTGACACTGAAGATGAGGAAGATTTGGAGGAAGAGAAGAGAAGAATAGAAGGAAAAAGTGGTGATGGGTTCAGTGTGCTGAATAGGGGCAGTGGTATGGTATTGACTGAAGAAGTGGGAGTGAAGGATAGGCTTTGCAGGGTGAGTTATGTGGACCAGGGTAAAGAAATGTATCTTGCAAAGGGGCTTGGTGTTGATGTCTGTGGTGATGGCATAGGTGGCTGTAGAGGTGGTGGTGGTGGTGGTGGAGGCAGTGGAGGTGGTGATTCTAATTCCATGGGTTCTGGAGGGAATGATGGAGATAGGCATGAGGTGGAAGAATATTACAAGAAAATGGTGGAGGAAAATCCTGGGAATCCATTGTTTCTGAGGAATTATGCTCAGTTTTTGTACCAGTGTAAACAAGACCGTGAAGGAGCTGAAGAGTATTATTCCCGGGCCATATTAGCAGATCCAAAAGATGGAGAAGTTCTATCACAGTATGGGAAGCTAGTTTGGGAGCTACATCATGACCAAGAACGAGCCTCAACCTATTTTGAACGAGCAGTCCAAGCCTCTCCCCATGACAGCCATGTACAAGCAGCATATGCTAGCTTCCTTTGGGACACAGAGGAAGAGGAGGATGAGCCACAATGTTTACCACCACATATTCATCTGGGAGCTATGGCTACAACAGGTGTTTAG 1131 0.4545 MMLRSSSTPVLGSLLSSFTDSPNNSVHSEACHAPKHLPPTSVPQYHHKRSFHQPGSFTLSPFSCSSSPISPSIADLDRQNKGFRRVQSEGNLEDLAYSSCNNNEDILNYIDPPKRFSGRHRCLALETIPSFSISKHRGLQVEEEDEEMESDTEDEEDLEEEKRRIEGKSGDGFSVLNRGSGMVLTEEVGVKDRLCRVSYVDQGKEMYLAKGLGVDVCGDGIGGCRGGGGGGGGSGGGDSNSMGSGGNDGDRHEVEEYYKKMVEENPGNPLFLRNYAQFLYQCKQDREGAEEYYSRAILADPKDGEVLSQYGKLVWELHHDQERASTYFERAVQASPHDSHVQAAYASFLWDTEEEEDEPQCLPPHIHLGAMATTGV. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04438 376 SUPERFAMILY TPR-like 249 356 IPR011990 GO:0005515
Seca2g04438 376 MobiDBLite consensus disorder prediction 230 251 - -
Seca2g04438 376 MobiDBLite consensus disorder prediction 25 50 - -
Seca2g04438 376 MobiDBLite consensus disorder prediction 144 160 - -
Seca2g04438 376 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 3 353 - -
Seca2g04438 376 SMART hat_new_1 284 316 IPR003107 GO:0006396
Seca2g04438 376 SMART hat_new_1 319 351 IPR003107 GO:0006396
Seca2g04438 376 SMART hat_new_1 249 281 IPR003107 GO:0006396
Seca2g04438 376 Gene3D Tetratricopeptide repeat domain 247 358 IPR011990 GO:0005515
Seca2g04438 376 Coils Coil 141 168 - -
Seca2g04438 376 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04438 Seca-Chr2 129780417 129783515 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04438 - - aprc:113861229 458.759