Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04437 ATGGCGTCTTCGTATCCTGGTTCTGTTAGTGCTGCCCAGGTGGGTTCCTACTTCGTGGGACAGTACTATCAAGTTCTTCGCCAGCAACCTACTCTTGTTCATCAGTTCTACTCCGATTCCAGCAGTATGATTCGCGTTGATGGAGATTCTACTGAGACTGCACCCGATGTGTTGCAAATTCATTCAATTGTCACGTCACTGAATTTTTCAACGATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGAATGGTGGCGTGCTTGTAATGGTCTCGGGTTTTGTTAAGATAAAGGATATCAATAGGAGGAGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTACTGAATGATATATTTCAGTTCATTGATGATGAAGTAACACACCCAAATCTAGTTCCGGCTGCAACTGAAAAGATTGACACACAGCAACCGCATGTACCTGCTTCTCTTGCTGAGCCACCAGCTTCGCACTATGATTTGGAGGAAGAGGCTAGGGAGTATGTCAATTCAGTTCATATAGATGATGATCCGGTGGACAAGTATAGTCTTCCTGAGCAGCAACAACAGCAGCAGCTACAAGACGATCTTGATGAAACTGAAATTGTGGTGGAGGAAACTCCTGCTCAGGAGGCATCTCCCCCAATTCATAGTGTTTCACATACCATCCGTGAAACCCCTGCTGCTCTTGTGGAAGAGTCTTACGAGGAGCCTCCCAAGAAAACATATGCATCCATTCTACGAGTCTCCAAAGGGCAGGCGGCGCTGTCTGCTGCTCCACAACACGCACCACAACATTCTTTCAAAAGTGCTGCTCCTCCTCCTTCGGAGTTGAATCATGTGGCACAGCCTTTTGTCCAGCATTCAAGCTCTGCATCTGCATATGCTGCTGACTCTGGGGCTGAGGCAGCAGAGGAAGGCTATGGACTAGAAGAAGAAGGTGAAGTAACATCTGTCTATGTGAGAAACTTGCCTGCTAATGTTACTGAAGCTGAAATTGACCAGGAATTTAAGCATTTTGGCAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTCGAAGACATTGTTGGTGTTCAAAATGCACTTCAGGCTTCACCCATACAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCAGTGCGGGTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCGGTTATCAAATGGATGCTCCAAGAGGGCGTTTTGGTGCTAGGAGCTTGGGAAGGGGGAGTAATCAGGATACTTCAGACTATACCAGACTAAGAGGTGATGGTTATCTGCAGCGTGGTTCACGATAG 1374 0.4622 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPTLVHQFYSDSSSMIRVDGDSTETAPDVLQIHSIVTSLNFSTIEIKTINSLDSWNGGVLVMVSGFVKIKDINRRRKFVQTFFLAPQEKGYFVLNDIFQFIDDEVTHPNLVPAATEKIDTQQPHVPASLAEPPASHYDLEEEAREYVNSVHIDDDPVDKYSLPEQQQQQQLQDDLDETEIVVEETPAQEASPPIHSVSHTIRETPAALVEESYEEPPKKTYASILRVSKGQAALSAAPQHAPQHSFKSAAPPPSELNHVAQPFVQHSSSASAYAADSGAEAAEEGYGLEEEGEVTSVYVRNLPANVTEAEIDQEFKHFGKIKPDGIFIRVRKEIGVCYAFVEFEDIVGVQNALQASPIQLAGRQVYIEERRPNSGSAGRGGRRGRGRGGYQMDAPRGRFGARSLGRGSNQDTSDYTRLRGDGYLQRGSR. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04437 457 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Seca2g04437 457 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Seca2g04437 457 Gene3D - 296 439 IPR012677 -
Seca2g04437 457 FunFam Nuclear transport factor 2 family protein 312 451 - -
Seca2g04437 457 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 448 IPR039539 -
Seca2g04437 457 Gene3D - 5 133 - -
Seca2g04437 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Seca2g04437 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 388 IPR000504 GO:0003723
Seca2g04437 457 CDD RRM_SF 325 396 - -
Seca2g04437 457 SMART rrm1_1 324 396 IPR000504 GO:0003723
Seca2g04437 457 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Seca2g04437 457 MobiDBLite consensus disorder prediction 261 283 - -
Seca2g04437 457 CDD NTF2 10 130 IPR018222 -
Seca2g04437 457 SUPERFAMILY RNA-binding domain, RBD 321 428 IPR035979 GO:0003676
Seca2g04437 457 MobiDBLite consensus disorder prediction 397 457 - -
Seca2g04437 457 FunFam Nuclear transport factor 2 family protein 5 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04437 Seca-Chr2 129772527 129780692 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04437 - - gmx:100787900 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04437 2 129772527 129780692 Seca2g04437 2 129772527 129780692 ECH