Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04436 ATGTACGGATGTGCATCAGTAAATGAATGCTTCAACTCACATATTAACCAGAACTGCATGTTCACATATTTCAGGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCCTCTTTGGGATAAATACATTGAATATGAGTACATGCAGCAAGACTGGGCCCGCCTTGCCATGATCTATACCAGAATATTAGAGAATCCAAATCAGCAGTTGGATCGGTATTTCAACAGCTTCAAGGAGTTAGCTGGTAGTCGACCTTTGTCAGAATTACAGACTGCTGATGAAGCTGCTGCAGTGGCTAGTGGTGTTACAGAAGGTACTGGCCAAGCTGTTGAGGGAGAGGTTCGTCCTGATGGTGCAGAAAACTCTCCTAAACCTGTAAGTGCTGGCTTAACAGAAGCAGACGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGATGTATAAGAAAGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTACTTTCATGTACGACCCCTCAATATTGGGGAGCTTGAGAATTGGCATAACTATTTGGACTTTATAGAAAGAGAAGGTGACCTAAGCAAGATTGTCAAGTTGTATGAGAGATGTGTCATTGCATGTGCCAATTATCCTGAGTACTGGATACGCTATGTTTTGTGTATGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTTCTTGCTCGGGCAACCCAAGTCTTTGTCAAGAGACAACCTGAGATACATCTCTTTTGTGCTCGGTTCAAGGAGCAGGTTGGAGATGTAGCTGGTGCTAGAGCTGCATATCAACTTGTGCATACTGAAATTTCTCCAGGTCTTCTTGAAGCAATAATCAAGCATGCCAATATGGAATATCGACTGGGAAAATTGGAGGATGCCTTCTCTTTGTATGAACAGGCCATTGCCATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAGTACTCTCGATTTGTTTATTTGGCTTCTGGAAATGCAGAGAAGGCAAGAGAGATTCTAGTAGGGGGGCTTGAGAATGTTTCGTTGTCAAAGCCACTACTTGAGGCTTTGTTGCATTTTGAGGCTATTCAACCCCATCCAAAGCGAGTTGATATTGACTATCTGGAGTCACTGGTTGTTAAATTCATAATGCCCAGCACAGAGAACCCAGGTGTAGCAAGTGCAACTGAGCGGGAGGAACTTTCTAGCATTTTTCTGGAGTTTTTAAATCTCTTTGGGGATGTTCAATCTATCAAGAGGGGCGAGGATAGGCATGCCAAACTGTTCTTGCCACATAGGAGCATGTCAGAGTTGAAAAAACGTCACGCAGATGATTTCTTAGCTTCAGATAAAACAAAAGTGGCTAGAACTTATTCTGCCCAATCTCCTGCCCAATCTCTGATGGGTGCATATCCCAATGCACCAAACCAATGGACTAACTATGGAGTACAACCTCAAACTTGGCCAGCAGTCACACAAGCACAAGGACAACAATGGACTGCTGGCTACACCCAGCAGGCTTCCTATGGGGCTTATGCTGGATATGGTGGCAACTATGCAAACTCACAAGTGCCTGCATCTGTTCCACAAAGTACTGCATACGGAGCCTATCCTCCTGCATATCCTGTACAGCCGGCACTTCCTCAACAAAATTATGCACAACCAGTTGCAGCCCCTACACAGCAACCTGCTGCGGTTCCTCAGGCCTATTACGGGAGTTACTATTAA 1764 0.4382 MYGCASVNECFNSHINQNCMFTYFRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELQTADEAAAVASGVTEGTGQAVEGEVRPDGAENSPKPVSAGLTEADELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHLFCARFKEQVGDVAGARAAYQLVHTEISPGLLEAIIKHANMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKAREILVGGLENVSLSKPLLEALLHFEAIQPHPKRVDIDYLESLVVKFIMPSTENPGVASATEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRHADDFLASDKTKVARTYSAQSPAQSLMGAYPNAPNQWTNYGVQPQTWPAVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQVPASVPQSTAYGAYPPAYPVQPALPQQNYAQPVAAPTQQPAAVPQAYYGSYY. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04436 587 SMART hat_new_1 302 337 IPR003107 GO:0006396
Seca2g04436 587 SMART hat_new_1 343 375 IPR003107 GO:0006396
Seca2g04436 587 SMART hat_new_1 198 230 IPR003107 GO:0006396
Seca2g04436 587 SMART hat_new_1 24 53 IPR003107 GO:0006396
Seca2g04436 587 SUPERFAMILY TPR-like 18 86 IPR011990 GO:0005515
Seca2g04436 587 SUPERFAMILY TPR-like 145 446 IPR011990 GO:0005515
Seca2g04436 587 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 469 - -
Seca2g04436 587 MobiDBLite consensus disorder prediction 110 132 - -
Seca2g04436 587 Gene3D Tetratricopeptide repeat domain 178 479 IPR011990 GO:0005515
Seca2g04436 587 Gene3D Tetratricopeptide repeat domain 16 90 IPR011990 GO:0005515
Seca2g04436 587 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 24 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04436 Seca-Chr2 129752927 129759281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04436 K13217 - gmx:100787373 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04436 2 129752927 129759281 Seca2g04436 2 129752927 129759281 ECH