Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04415 ATGGAGGATTCTGGAAAATCCAGCAGCAAAACTAAACTGTTGAATCCATGGATGCTTCACTTCCAGAAGCTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGCTTGTTCAAGAGGCCGGTGTTGCTGCCGTGCGACCACTTGTTTTGCAATTCCTGCTTGGCTGATAGCACGACGGCGGGGTCTGCATGTGCTGTCTGTAAGACTAAGTATACTCAAAAAGATGTTAGGCATATGCCTTTTGTGGAGAACATGGTAGCAATCTATAGAAGCTTGGATGCCACCTTTTGCGCTAGCCTGTTTCAGCAACGTTCTTCTGATGATCTTAGGGTTTTGGAGCCATGCCAAACATTTCTGAATTCTTCTTCTAATAATAAGAAGACAGATAAGGCTCCATGGCATTCACTTGATTCTAATGAAGTTGGGGTTGGCAAGAATCACAAATCCAAGATTTCAGTGCATGACAAAGCTGAGGAGGTTGAGATGTCTTGTGGAGGAAGGGTTGACTCTCACAGTGCAGGGAAGCCGAATCTAATGCAATGTTCCCAGATGGAAATTGGGGACCGTGTGGAAATGGATGTGAATCAAGTGATGCAATCAGCACCTGACAGCTCTCCATTTTGTGATTCCAAAGGTTCAGATAATGACTTCAGTGATCAAGACAGTGAGCATCCATTCAATCTTGAGCGATTGGAAAATTCTTCATTGAAGAGAGCAAGCACAGAAAAAGGAAATTTGAAAGAAAGAATGGCCCAGTTCAGGTCTGAAAGTTCTGCGTCTGAAACTGAGGGTCTTATGAGAGATCTCAAGAGACAAAAAATTCTTACCAATGGAGATGATCATATTCAACACAGAACTTCTCAACAAAATAAGTTTGTGGATTCCTGCTGTGCTCTGGACCTTAAATCTGGAAAGGACACTGTTGCACCGTTGCCAGCAAATGCACCGAATGACTCGCTTCCAAGTACAAGTATCTGTTCGTTTTGTCAATCCTCTAAAACCTCAGAGGCTACTGGGCCAATGCTGCATTATGCAAATGAAAATTCAGTTACTGGAGATGCAGCCATGCAACCAAATGTCATACATGTGCATAGAATTTGCATTGACTGGGCACCTCAAGTGTATTTTGTTGATGAAACTGTTCAGAATTTGAAGGAAGAAGTGGCAAGGGGAGCAAAGCTTAAATGCAGCAAATGTGGTCTAAAGGGAGCTGCTCTTGGTTGCTATGTCAAATCCTGTAGAAAAACTTATCATGTCCCTTGTGCAATGGACATCTCAACTTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTAGTCATTGTCATGTCAAATTTCCAAGTGAGAAATCCAGACCTAAAAAACAGGCAACTCAGAAGCAGCCCGCTTCATCTCATCTGCCATTGCCACTGTCAAACCCTCTGGGTGCTTCACAGAGTGGTGGTAAAAAAATGGTTTTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTTCTATTGATCAATTTTGCAAGCAGGGTTGGTGCTAGAGTGAATAAGTTCTGGACCTCAGATGTCACCCATGTTATTGCAGCAACTGATGCAAATGGAGCATGCTCCAGGACACTAAAAGTTCTCATGGCAATTCTAAATGGACGATGGATTCTGAAAATGGATTGGGTAAAAGCATGCATGGAAGTGATGAATCCTGTAGAAGAAGAACCATATGAAATTGGTCTTGACAACCAAGGGTGTAATGGTGGCCCAAAAGCTGGCAGGCTTAGGGCACTGGCCAATGTAAAGCATCTTGATATTAAGCATCTTGATGAATTTCCTTGTCTTGCAACTGAAGTATCTAGATGGATAAAGATAATTTATTCTGTTTAG 1869 0.4275 MEDSGKSSSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCDHLFCNSCLADSTTAGSACAVCKTKYTQKDVRHMPFVENMVAIYRSLDATFCASLFQQRSSDDLRVLEPCQTFLNSSSNNKKTDKAPWHSLDSNEVGVGKNHKSKISVHDKAEEVEMSCGGRVDSHSAGKPNLMQCSQMEIGDRVEMDVNQVMQSAPDSSPFCDSKGSDNDFSDQDSEHPFNLERLENSSLKRASTEKGNLKERMAQFRSESSASETEGLMRDLKRQKILTNGDDHIQHRTSQQNKFVDSCCALDLKSGKDTVAPLPANAPNDSLPSTSICSFCQSSKTSEATGPMLHYANENSVTGDAAMQPNVIHVHRICIDWAPQVYFVDETVQNLKEEVARGAKLKCSKCGLKGAALGCYVKSCRKTYHVPCAMDISTCRWDHEDFLLLCPSHCHVKFPSEKSRPKKQATQKQPASSHLPLPLSNPLGASQSGGKKMVFCGSALSNEEKVLLINFASRVGARVNKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWILKMDWVKACMEVMNPVEEEPYEIGLDNQGCNGGPKAGRLRALANVKHLDIKHLDEFPCLATEVSRWIKIIYSV. 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04415 622 Pfam PHD-like zinc-binding domain 364 442 - -
Seca2g04415 622 MobiDBLite consensus disorder prediction 200 265 - -
Seca2g04415 622 MobiDBLite consensus disorder prediction 123 148 - -
Seca2g04415 622 FunFam Breast cancer type 1 susceptibility protein homolog 483 589 - -
Seca2g04415 622 SUPERFAMILY BRCT domain 486 573 IPR036420 -
Seca2g04415 622 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Seca2g04415 622 FunFam Breast cancer associated RING 1 320 445 - -
Seca2g04415 622 ProSiteProfiles Extended PHD (ePHD) domain profile. 323 443 IPR034732 -
Seca2g04415 622 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Seca2g04415 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 445 IPR013083 -
Seca2g04415 622 Pfam Zinc finger, C3HC4 type (RING finger) 27 72 - -
Seca2g04415 622 CDD BRCT_Bard1_rpt1 487 560 - -
Seca2g04415 622 SUPERFAMILY RING/U-box 27 90 - -
Seca2g04415 622 SMART ring_2 30 67 IPR001841 -
Seca2g04415 622 MobiDBLite consensus disorder prediction 458 479 - -
Seca2g04415 622 SMART BRCT_7 469 562 IPR001357 -
Seca2g04415 622 Pfam BRCA1 C Terminus (BRCT) domain 488 559 IPR001357 -
Seca2g04415 622 Gene3D BRCT domain 483 588 IPR036420 -
Seca2g04415 622 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 121 593 IPR031099 GO:0006281|GO:0006974
Seca2g04415 622 MobiDBLite consensus disorder prediction 214 250 - -
Seca2g04415 622 CDD RING-HC_AtBARD1-like 24 77 - -
Seca2g04415 622 FunFam Breast cancer associated RING 1 15 100 - -
Seca2g04415 622 MobiDBLite consensus disorder prediction 448 479 - -
Seca2g04415 622 ProSiteProfiles BRCT domain profile. 483 572 IPR001357 -
Seca2g04415 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 100 IPR013083 -
Seca2g04415 622 Coils Coil 236 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04415 Seca-Chr2 129423316 129440464 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04415 K10683 - gmx:100784883 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04415 2 129423316 129440464 Seca2g04415 2 129423316 129440464 ECH