Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04354 ATGGCGAACCCTCAAAAGCCATGGAAAGCAGAGTACGCCAAGTCAGGGAGATCGTCATGCAGGACGTGCAAGATCCCCATTAACAGCGAGAAGCTCCGTCTCGGCAAGATGGTTCAATCCACCAAATTCGATGGCCTCATGCCTATGTGGAATCATGCTGATTGCATACTGAAGAAAGCCAACCAGATAAAATCAATTGATGATGTTGAAAACATAGAGTTGCTTCGTTGGGAAGATCAACAGAAGATCAGAAAATACATAGAGAGCGGTGGCCCACCACCAAAATCAAATGCCACCAAAGATACTGAATGTGGTATTGAAGTTTCACAAACTTCTCGTGCTACTTGCAGGCATTGTGGTCAAAAAATCATCAAAGGAGAGGTTCGGGTATCTACTAAGCCTGATGGTCAAGGTGCTAAGGGTTTGGCATGGCACCATGCCAAGTGTTTCATGGAATTATCACCATCAATTCAAGTGGATAAGTTGTCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTCTCAGTGATTTGGCTAAGAGGGGTCGTCCTATGAATAAAGGAGATGGTAGTGGTACAAAGGTTGAGGCTGAAGAGGTTAAAGAATCCACTTCCAAAGGTGGCACCAAACGGGGGAAGGGTGCTGATGGTGAGCAGAAGTCAAAAGTTCCTAAGGCCAAGGGAAATGTGTCCGCGGGCAGGGCAGCATCAATGAAAAATACTGATGACTCAGGGGAAGCACATGATCTGGAGAATAAACTGGAGGCACAGAGCAAAGAACTCTGGGCTTTGAAAGATGATCTTAAGAAGCATGTGACAACGGCAGAGTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGTGATCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCATTGCCCCCTATGTTCTGGTTTTCTGCGTTATTCTGGAGGAATGTACCGGTGCAATGGATACATTTCTGAGTGGAGTAAATGTTCCTACTCTACCTGCGAACCAAAACGTGCTGAAGGGAAGTGGAAAATCCCAGAGGAAACAAATAATCAGTACCTTAAAAAGTGGTTTAAATCTCAGAAGGGGAAGAAACCAGTTAGGATATTGCCTCTTCCGTCATCAAGGAATTCTGCTGAAGGTCAAATTAATGCTTGCCAGCCTCAATCATCAAACAGTGAAAGTTTGGGAGATTTGAAAGTTGCTATCTCTGGATTACCTAAAGAGTCTATTGGGGAATGGAAACGCAAAATTGATGGCATAGGTGGAGTGTTTCATGCAAAACTGAAGAAAGATACTAGCTGCTTGGTGGTCAGTGGAGTGCTCAATGATGAAGCTGAGGTGCAGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATAGAAAGAAAGAGGAAGCTTCCATTTGATATGTACAAAGTTGAAATGATTGGTCAGGCTTCTAGCATGGTCACCATAAAAGTGAAGGGGCAAAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCTGGCCACATACTTGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCTGATTTGTCTACTGGTGTTAACAGCTACTACATTCTCCAAATAATCCAAGAAGATAAGGGGTCAGGTTGCTATGTGTTTCGTAAATGGGGCCGAGTGGGAAATGACAAGATTGGAGGAACCAAACTGGACGAAATGCCAAAAGCTGATGCAATCTGTGAATTCAAACGATTATTCTTTGAGAAAACTGCAAACCTGTGGGAGGCTTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTCTTCCCACTGGAAATTGATTATGGAGTTAACAAACAAGGCCCTAAAAAAAATAAAAACAATGCAGAGAGCAAGCTTCCCCCACCATTAATAGAATTGATGAAGATGCTCTTCAATGTGGAAACATACAGGGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAGAAGGGGTTTGAAGCATTAACAGATATACAGAATCTGTTAAAAACTAGCAATCCTGATCCATCAATCAAGGAAAGCTTGCTTATTGATGCCAGCAATCGATTCTTCACTGTGATCCCTTCCATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCAAAGGTTAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTATAAGAAGCTCCACTGTGATATATCTCCACTTCCACATGACAGTGAAGATTTTTGTTTAATTGAGAAGTTTCTCCATACTACTCATGCCCCCACACATATGGATTGGAGTCTGGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAACTTGATAAGTTTGCTCCTTACAGGAATAAACTCGGTAACAGAATGCTCCTATGGCATGGTAGGTTGATACTAACTACTAGTTCACTTGTGTTTGCTGTTATGAAATATCCTCCTGTAACATAA 2586 0.4207 MANPQKPWKAEYAKSGRSSCRTCKIPINSEKLRLGKMVQSTKFDGLMPMWNHADCILKKANQIKSIDDVENIELLRWEDQQKIRKYIESGGPPPKSNATKDTECGIEVSQTSRATCRHCGQKIIKGEVRVSTKPDGQGAKGLAWHHAKCFMELSPSIQVDKLSGWNSLSSSDQSALSDLAKRGRPMNKGDGSGTKVEAEEVKESTSKGGTKRGKGADGEQKSKVPKAKGNVSAGRAASMKNTDDSGEAHDLENKLEAQSKELWALKDDLKKHVTTAELREMLEANGQDSTGSELDLRDRCADGMMFGALGHCPLCSGFLRYSGGMYRCNGYISEWSKCSYSTCEPKRAEGKWKIPEETNNQYLKKWFKSQKGKKPVRILPLPSSRNSAEGQINACQPQSSNSESLGDLKVAISGLPKESIGEWKRKIDGIGGVFHAKLKKDTSCLVVSGVLNDEAEVQKARRMKIPIVREDYLVDCIERKRKLPFDMYKVEMIGQASSMVTIKVKGQSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGVNSYYILQIIQEDKGSGCYVFRKWGRVGNDKIGGTKLDEMPKADAICEFKRLFFEKTANLWEAWEQKTIQKQPGRFFPLEIDYGVNKQGPKKNKNNAESKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTDIQNLLKTSNPDPSIKESLLIDASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIEKFLHTTHAPTHMDWSLELEEVFSLEREGELDKFAPYRNKLGNRMLLWHGRLILTTSSLVFAVMKYPPVT. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04354 861 SMART BRCT_7 403 480 IPR001357 -
Seca2g04354 861 Pfam PADR1 (NUC008) domain 298 347 IPR012982 GO:0008270
Seca2g04354 861 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 8 91 IPR001510 GO:0003677|GO:0008270
Seca2g04354 861 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 242 381 IPR047572 GO:0008270
Seca2g04354 861 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 11 87 IPR001510 GO:0003677|GO:0008270
Seca2g04354 861 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 107 178 IPR001510 GO:0003677|GO:0008270
Seca2g04354 861 SUPERFAMILY WGR domain-like 497 623 IPR036930 -
Seca2g04354 861 Gene3D - 234 307 - -
Seca2g04354 861 ProSiteProfiles SAP motif profile. 270 304 IPR003034 -
Seca2g04354 861 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 104 184 IPR001510 GO:0003677|GO:0008270
Seca2g04354 861 Pfam WGR domain 530 608 IPR008893 -
Seca2g04354 861 Coils Coil 248 268 - -
Seca2g04354 861 MobiDBLite consensus disorder prediction 176 249 - -
Seca2g04354 861 ProSiteProfiles BRCT domain profile. 400 490 IPR001357 -
Seca2g04354 861 Gene3D BRCT domain 396 497 IPR036420 -
Seca2g04354 861 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 98 - -
Seca2g04354 861 PANTHER DNA LIGASE 103 841 - -
Seca2g04354 861 Pfam Poly(ADP-ribose) polymerase catalytic domain 785 841 IPR012317 GO:0003950
Seca2g04354 861 FunFam Poly [ADP-ribose] polymerase 2 100 - -
Seca2g04354 861 SMART WGR_cls 530 613 IPR008893 -
Seca2g04354 861 SMART zf_PARP_3 107 181 IPR001510 GO:0003677|GO:0008270
Seca2g04354 861 SMART zf_PARP_3 11 88 IPR001510 GO:0003677|GO:0008270
Seca2g04354 861 Gene3D - 308 368 IPR038650 -
Seca2g04354 861 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 640 775 IPR036616 GO:0003950
Seca2g04354 861 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 190 - -
Seca2g04354 861 FunFam Poly [ADP-ribose] polymerase 308 369 - -
Seca2g04354 861 CDD parp_like 640 841 - -
Seca2g04354 861 ProSiteProfiles WGR domain profile. 519 618 IPR008893 -
Seca2g04354 861 Pfam Poly(ADP-ribose) polymerase, regulatory domain 641 771 IPR004102 GO:0003950
Seca2g04354 861 FunFam Poly [ADP-ribose] polymerase 101 208 - -
Seca2g04354 861 SUPERFAMILY ADP-ribosylation 774 841 - -
Seca2g04354 861 FunFam Poly [ADP-ribose] polymerase 235 307 - -
Seca2g04354 861 Gene3D - 631 774 IPR036616 GO:0003950
Seca2g04354 861 FunFam Poly [ADP-ribose] polymerase 398 499 - -
Seca2g04354 861 ProSiteProfiles PARP catalytic domain profile. 765 861 IPR012317 GO:0003950
Seca2g04354 861 SUPERFAMILY BRCT domain 402 490 IPR036420 -
Seca2g04354 861 CDD WGR_PARP1_like 520 625 - -
Seca2g04354 861 MobiDBLite consensus disorder prediction 193 224 - -
Seca2g04354 861 ProSiteProfiles PARP alpha-helical domain profile. 640 758 IPR004102 GO:0003950
Seca2g04354 861 Pfam BRCA1 C Terminus (BRCT) domain 407 477 IPR001357 -
Seca2g04354 861 FunFam Poly [ADP-ribose] polymerase 633 774 - -
Seca2g04354 861 SMART PADR1_2 296 349 IPR012982 GO:0008270
Seca2g04354 861 Gene3D - 2 99 IPR036957 GO:0003677|GO:0008270
Seca2g04354 861 Gene3D - 100 204 IPR036957 GO:0003677|GO:0008270
Seca2g04354 861 Gene3D - 775 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04354 Seca-Chr2 128390004 128399871 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04354 K24070 - gmx:100815900 1418.68