Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04315 ATGGCCATTGCCCTGAAATCATCCTGCTTCTTGCAATTGAAGAAACCTGAGGCCGGTTTCCAGGTTTGTTTTTCCTCCAAGAAAGCTATAATCTCAGTAAAAAGATACACTCCTATGGCTGCTCTCAGGACTGTGGAAACAGTTGGGCTCTCTGAGACATTCAACAGGCTGAAGAAACAAGGAAAAGTGGCTCTCATCCCATACATCACAGCTGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGTGGATCTGACATAATTGAGCTAGGTGTTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACACGATCTCTAGCAAGAGGGACCAATTTCAATGCAATTATTTCTATGTTGAAGGAGGTTGTTCCACAATTATCTTGTCCCATTGCGCTGTTTTCTTATTACAATCCAATACTGAAGCGTGGTACTGAGAGATTTATGTCCACCATAAGAGACAGTGGCGTGCATGGGCTAGTAGTCCCAGATGTTCCACTGGAGGAGACCAAAACTTTGAGGGCAGAAGCTATGAAGAATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCAACAAACCGAATGAAAGCCATTGTTGATGCTTCAGAAGGATTTGTGTATCTTGTGAGCTCTGTGGGGGTCACCGGAGCCAGAGCATCAGTTAGTGATAAAGTTCAGGCTCTTCTGCAGGAAATTAAACAGGCAACAACTAAGCCTGTGGCAGTTGGTTTTGGAATATCAAAACCCGAGCATGTGAAACAGGTAGCAGGATGGGAAGCTGATGGTGTGATTGTTGGCAGTGCAATGGTGAAGTTGCTTGGTGAGGCCAAATCTCCACAAGAGGGATTGAAAGAGCTGGAAAATTTCACCCGCTCCTTAAAATCAGCACTTCCTTGA 936 0.4541 MAIALKSSCFLQLKKPEAGFQVCFSSKKAIISVKRYTPMAALRTVETVGLSETFNRLKKQGKVALIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAIISMLKEVVPQLSCPIALFSYYNPILKRGTERFMSTIRDSGVHGLVVPDVPLEETKTLRAEAMKNGIELVLLTTPTTPTNRMKAIVDASEGFVYLVSSVGVTGARASVSDKVQALLQEIKQATTKPVAVGFGISKPEHVKQVAGWEADGVIVGSAMVKLLGEAKSPQEGLKELENFTRSLKSALP. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04315 311 Hamap Tryptophan synthase alpha chain [trpA]. 60 309 IPR002028 GO:0004834|GO:0006568
Seca2g04315 311 SUPERFAMILY Ribulose-phoshate binding barrel 50 290 IPR011060 -
Seca2g04315 311 ProSitePatterns Tryptophan synthase alpha chain signature. 94 107 IPR018204 GO:0004834
Seca2g04315 311 Pfam Tryptophan synthase alpha chain 54 309 IPR002028 GO:0004834|GO:0006568
Seca2g04315 311 FunFam Tryptophan synthase alpha chain, chloroplastic 48 311 - -
Seca2g04315 311 CDD Tryptophan_synthase_alpha 64 307 IPR002028 GO:0004834|GO:0006568
Seca2g04315 311 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 41 310 IPR002028 GO:0004834|GO:0006568
Seca2g04315 311 Gene3D Aldolase class I 49 311 IPR013785 -
Seca2g04315 311 NCBIfam tryptophan synthase subunit alpha 54 307 IPR002028 GO:0004834|GO:0006568
Seca2g04315 311 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04315 Seca-Chr2 127792902 127797418 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04315 K01695 - gmx:100808400 531.176