Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04308 ATGGCGGGAAAAGGAGGGAAGGGGCTTCTGGCTGGAAAAACCACAACAGGGAACAAGGACAAAGACAAGGATAAGGATAAGAAAAGGCCTGTCTCACGCTCATCTCGTGCTGGGATCCAGTTTCCTGTGGGTCGTATACACAGGCAACTGAAACAAAGGGTCCAAGCTAATGGGCGTGTTGGGGCAACTGCTGCTGTTTACTTGGCCTCAATTCTGGAATATCTGACTGCTGAGGTGCTGGAACTGGCTGGAAATGCAAGCAAGGATCTCAAGGTGAAGAGGATCACACCAAGGCATTTGCAGCTAGCTATTAGGGGAGATGAAGAGCTGGACACTCTCATCAAAGGGACAATTGCTGGTGGTGGTGTCATCCCTCATATTCACAAGTCCTTGATCAACAAAGCCTCCAAAGAATGA 417 0.4916 MAGKGGKGLLAGKTTTGNKDKDKDKDKKRPVSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKASKE. 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04308 138 Gene3D Histone, subunit A 17 138 IPR009072 GO:0046982
Seca2g04308 138 MobiDBLite consensus disorder prediction 16 33 - -
Seca2g04308 138 PANTHER HISTONE H2A 23 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 SMART h2a4 18 138 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 MobiDBLite consensus disorder prediction 1 38 - -
Seca2g04308 138 FunFam Histone H2A 17 138 - -
Seca2g04308 138 PRINTS Histone H2A signature 59 74 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 PRINTS Histone H2A signature 74 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 PRINTS Histone H2A signature 88 102 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 PRINTS Histone H2A signature 115 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 PRINTS Histone H2A signature 29 51 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04308 138 SUPERFAMILY Histone-fold 14 115 IPR009072 GO:0046982
Seca2g04308 138 Pfam C-terminus of histone H2A 108 137 IPR032454 -
Seca2g04308 138 Pfam Core histone H2A/H2B/H3/H4 17 106 IPR007125 GO:0003677
Seca2g04308 138 CDD H2A 29 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04308 Seca-Chr2 127689016 127690891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04308 K11251 - gmx:100807862 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05728 8 149511921 149513596 Seca2g04308 2 127689016 127690891 PCT