Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04273 ATGTGGTTAAAATGTTCTGGTATTTGTCCTAACATTTTACATACAGAACAGACAGACTCGCCTCAGCTGCTGCTGGCTCGTTGGTTCGCCATTCACTCACTGACGACACAGCTTTCACCGAGCAAACCCATCTCAGAGCTTATTTTGGATATCATCAAGAATTTTATCGACTTCATTCTGAAATTCACACAGTTCAAGATGCTTGCAATAAGAAAGCTCAAAAAAGGACCAGATCTCCCTTTTGTTTTATGTTTCATGGTTGCTAATTGCAATGATGGCACAGCCCATGTTTCCAATAACAGAAGTCTAAAGTATATTGTTAAGTCTGTTAAGCCTTGTTTAGCCAACTCAAGTTCACAAGCACTTTTACTGGGGTTAGAGAATAAGTTCACCCTTCAAGGACTATATTTCTCAAGCATGGCTGAAAGAATCCTGGTCCAGGCTCAAGACCCAGCTAAAGTTAGTATGGAAATACAAAATGCTATCGATGGGAATGAATTAGATTATTCATGGAAGTTATTTGAGCAGCATTTACACATGGAGGGATTTCCCAGAAAATCTGTCTTTAACAAGCTTGTAACAAGTTATGTGGAAAGCTTTGATATGCAATGGCTACAAAAAGCTTATGAATTGGTAGAACGTGCTATTGAGGAAGGTAAACAAGACTTGTTAGAGAAGGAGGTGCTTATCTACCTTAGCTATGGCCTTGCGAAAGCCGGACTGTCAGTTCTGGCATCAACCATTTTAAGAAAGATGATAACTATGGAGCATTTTCCTTCTGTCATTGCTTGGTCTGCAGTTTTGGCACATATGTCACAGACACCAGATGGAAGTTGCCTTGCTGCTGAGTTAATTCTTGAAATAGGTTATTTGTTCCAAAACAACAGAGTTGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAGCCAAACACCACTGCTTTTAATATTGTGTTGGCAGGGTGTCTCTTATTTGGGAAATCTAGGAAGGCAGAACAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCTGATGCAAACTTACTGATAACAATGGCACGTGTATATGAGAGAAATGGGCGAAGAGAAGAGCTTAAGAAGCTACAAAGGCATGTAGAGGAAGCTCCAAATCTAACTGATATACAGTTCCGACAGTTTTATAACTGTTTGCTCACATGCCATTTGAATTTTGGGGATCTAGATTCTGCATCGAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCTAAATTTATGATTGATGCAGCTAAAATTGATAGTAACCATTCTCCTGGACCAGCTTCTGTGCATAGTTTGAGCAACAGTAAAGATTTAGATAATTTAAAAGATGATGAGCCAATAATCAATGCTATCTTATCTTATGAGGAGTTCTCTAAAGATCGAAACTTCTTAAAACTTGAAGCAGAGTCAAATGGTGTTCTTGGTTCTTTATTAGCTAAATTACAGATGCAAGTTGATTTGATCACAACCGTACATGGTATACTGCAACCAACTGAAACAATTTATGTGAAATTAGTTAAAGCTTTTCTTGAGGCTGGCAAGACTAAGGATTTGGCAGTGTTTCTTCTCAAGGCAGAAAAAGAAGATTCCCCATTTTCCAATGACAATTCAGCCTTGGTTCATGTTGTTAATTCATGCATTTCACTTGGATGGTTGGATCAAGCACATGATCTCCTTGATGAGATGCGTCTAGCTGGAGTTAGAACTGGTTCATCTGTATATGCTTCTCTTTTGAAAGCATACTGTCAAGCAAATAGGGCTGCAGATGTCACATCACTTTTGAGAGATGCTAGGAAGGCTGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGGGTGCTCCAGAAAGATACACAGGGAGCACTTAGACTATTTAAAGAGATGAAAGGGGCTAAGATTCCAAAAATTAGTCAACAAGACTCTGGCATGGTGGCTAAAAGTGTTGCAGAAAGAGATAAAGCCGTGCTGATGACGAAGCTATTGCAGGAAATCAAGGAAGGACAGAAAGTGGATTGTGGAGTTCATGACTGGAATAACATAATCCACTTTTTTTGCAAGAAGAGACTAATGCAAGATGCAGAAAAGGCTCTTAAGAAGATGAGAAGCTTAGGACATTCACCCAATGCACAAACTTTCCATTCTATGGTCACTGGATATGCTGCCATTGGAGGGAAATATCTGGAAGTAACAGAGCTGTGGGGTGAGATGAAAGCTCTTGCTTCTTCATCCTCCATGAAGTTTGATCAGGAACTTCTTGATTCAGTGCTGTATACATTTGTGAGGGGTGGATTCTTCATTCGAGCCAATGAAGTTGTGGCAATGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAGTATCATAAAACACTTTACAAAGGCAAGGCTCCGAAATTTCAGACAGAATCCCAATTAAACAAAAGGGAAGCAACCATTTCTTTTAAAAGGTGGATAGGCTTGACTTGA 2553 0.396 MWLKCSGICPNILHTEQTDSPQLLLARWFAIHSLTTQLSPSKPISELILDIIKNFIDFILKFTQFKMLAIRKLKKGPDLPFVLCFMVANCNDGTAHVSNNRSLKYIVKSVKPCLANSSSQALLLGLENKFTLQGLYFSSMAERILVQAQDPAKVSMEIQNAIDGNELDYSWKLFEQHLHMEGFPRKSVFNKLVTSYVESFDMQWLQKAYELVERAIEEGKQDLLEKEVLIYLSYGLAKAGLSVLASTILRKMITMEHFPSVIAWSAVLAHMSQTPDGSCLAAELILEIGYLFQNNRVDPRKKSNAPLIAMKPNTTAFNIVLAGCLLFGKSRKAEQLLDMMPRIGVKADANLLITMARVYERNGRREELKKLQRHVEEAPNLTDIQFRQFYNCLLTCHLNFGDLDSASNMVLEMLRKAKEARNSLAAAKFMIDAAKIDSNHSPGPASVHSLSNSKDLDNLKDDEPIINAILSYEEFSKDRNFLKLEAESNGVLGSLLAKLQMQVDLITTVHGILQPTETIYVKLVKAFLEAGKTKDLAVFLLKAEKEDSPFSNDNSALVHVVNSCISLGWLDQAHDLLDEMRLAGVRTGSSVYASLLKAYCQANRAADVTSLLRDARKAGIQLDSSSYEAMIQSRVLQKDTQGALRLFKEMKGAKIPKISQQDSGMVAKSVAERDKAVLMTKLLQEIKEGQKVDCGVHDWNNIIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAAIGGKYLEVTELWGEMKALASSSSMKFDQELLDSVLYTFVRGGFFIRANEVVAMMEKGNMFVDKYKYRMLFLKYHKTLYKGKAPKFQTESQLNKREATISFKRWIGLT. 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04273 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Seca2g04273 850 Pfam PPR repeat family 697 742 IPR002885 -
Seca2g04273 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Seca2g04273 850 Pfam Pentatricopeptide repeat domain 610 655 IPR002885 -
Seca2g04273 850 Gene3D Tetratricopeptide repeat domain 542 659 IPR011990 GO:0005515
Seca2g04273 850 PANTHER BNAC05G43320D PROTEIN 109 849 - -
Seca2g04273 850 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 729 IPR002885 -
Seca2g04273 850 NCBIfam pentatricopeptide repeat 699 731 IPR002885 -
Seca2g04273 850 Pfam PPR repeat 316 345 IPR002885 -
Seca2g04273 850 Pfam PPR repeat 560 585 IPR002885 -
Seca2g04273 850 Pfam PPR repeat 390 416 IPR002885 -
Seca2g04273 850 Gene3D Tetratricopeptide repeat domain 667 847 IPR011990 GO:0005515
Seca2g04273 850 Gene3D Tetratricopeptide repeat domain 152 446 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04273 Seca-Chr2 127222749 127226136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04273 591 812 Miscellaneous Gene Families AT4G11690 20.628 1.14e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04273 - - gmx:102661989 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04273 2 127222749 127226136 Seca2g04273 2 127222749 127226136 ECH