Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04270 ATGTCTGGACTGATTGAAGGACTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCCTTCTACCTCCACCCAAAGTTAGAGCTTGTCTCTCGTTCTTGGCAAGCAGCCATTCGTAGCCCTGAACTATTTAAAGCTCGGCAGGAGGTTGGTTCATCTGAGGATCTGCTATGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGCTTTATGACCCTTTAAGAGATCTCTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAGACACCTTTCTCACTTTGGTGCTGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACTGGTGATCAGGATGGTTGTTTTGCAACCGATGAAGTCTGGTCATATGACCCTGTAGTCCGGCAGTGGGCCCCTCGGGCTTCAATGCTTGTTCCTCGATCTATGTTTGCATGCTGTGTTTTGAATGGGAAAATTGTTGTAGCTGGAGGCTTCACTAGCTGTAGAAAAACAATCTCTCAAGCAGAAATGTATGACCCTGAGAAGGATGTGTGGATTCCAATGCCTGATCTTCATCGTACTCATAATTCAGCCTGTTCAGGAGTAGTGCTAGGTGGAAAGATGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCTGGGTGGATAGTTGAGGAATGTGCATGGCTCCAAGGTCCAATGGCAGTTGTCCAAGATGCACCATATGTCATGAGCCATGGATGCATCATGAAGCAGGACAGAGAAGGGAGAAAGTTTGTAGGTTCAGCATCCGATTTTCGAAGGAGAATTGGGTTTGCAATGATTGGGCTAGATGATGAGTTATACGTGATAGGAGGCTTCATTGGCCCTGACAGATGGAATTGGGACATTAAGCCATTATCCGATGTTGATGTTCTCACACTTGGGAGTGAGAGACCAACTTGGCGCCAGGCAGCTCCAATGACACGGTGTCGTGAATTTCACTTCATTCATAATCATAGATATAAAATTGGAGCCTCACATGAGTACAGTGGTGGTTGTGCAGCTTCTTTAGTCGATGACTCTGTCTCTCCATTCCATAAGGACAGTATCAGAGCCATTCGGTTTGGTGCAAATGGAAAACTCTTCGTATCTGCCGGTGACGATAAAACCCTCAAAATATGGTCACCACAGTCTTGGCACTGCATCTGCACCGTGTCTTCGGAAAAGAGAGTCTCTGCGGTTGCTATTAGCAATGATGGATCTTACGTTTGCTTCGCTGACAAATTCGGCCTTGTTTGGGTTGTGGATCTCGATCAACCATTAACTGATAAGAAACCAACACCGCTTCTTTCTCACTATTGTAGTATCATCACTAGCTTGGAATTTTCCCCTGATGGTCGGTTTATTTTTAGTGCAGATCGGGATTTTAAGATTCGTATTACTAACTTTCCCAAGAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTTGGTCATACAGAGTTTGTCTCCTGCCTCGCCTTTGTCCCTGCTCAGGAATGCCCTCAGAGCCTTCTTCTTTCTGGCAGTGGCGATTCCACGGTTCGACTGTGGGATATATCCTCTGGAGCACTCCTAGATACTTGTGAGGTTGCAATTAAGAGTGACAGGTTCTTATCCCTCTGTGTTGTTACATTTGGTTTTTATTTTCTTGTTCTTCATCTTCTGTTTCTAAAGGCAGGACTTTTAGAATCTAGTGATAAAGCAGAGGAGCATGCCCATGCTGTTACTGATTTATGCACCACCCTGGATGGTTTGCTTGTTGCAGTTGCCGTTCAGAGGCAAGTCTCTAGTTATTTAGTTCTGTCATATTTCTCTTCAGGAGAATTTAGTATTAGTTTATTGACAAGTTTCTTTGATACCACTGTGGTTTCTATTGCAGGAGAGGCATTTGTCCCTACCTGCCTGGGGAACATCCCCTCTACAAGGAATTTGTGGATGGTTACAGGTGTCTCTAGTTTACCTGGTTGTAATTACCCCTCTTTGGCTCGTGTCCGTGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAATCGTTCTGGGAGATGATAAGATTCCTGGGGGAGAAAAATTGCTAGAAACGTTGCAAGGAACTGCATCTGTTGACGACAATGCTTTCTTGGCAGCAGCTGAAGCTGTTAAAACTGCAATGTGCAACCTATTGATAAAAAAGCAATACCCTGCAGAGAATAGAGAATCTAGGAAGAAGACCAGAAATGATAAAAAACTCAAGGGGTAG 2292 0.445 MSGLIEGLPDAVAIRCLARVPFYLHPKLELVSRSWQAAIRSPELFKARQEVGSSEDLLCVCAFDPENLWQLYDPLRDLWITLPVLPSKIRHLSHFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSCRKTISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVLGGKMHVLHKDMSTVQVLDNAGPGWIVEECAWLQGPMAVVQDAPYVMSHGCIMKQDREGRKFVGSASDFRRRIGFAMIGLDDELYVIGGFIGPDRWNWDIKPLSDVDVLTLGSERPTWRQAAPMTRCREFHFIHNHRYKIGASHEYSGGCAASLVDDSVSPFHKDSIRAIRFGANGKLFVSAGDDKTLKIWSPQSWHCICTVSSEKRVSAVAISNDGSYVCFADKFGLVWVVDLDQPLTDKKPTPLLSHYCSIITSLEFSPDGRFIFSADRDFKIRITNFPKKPLNGAHQIQSFCLGHTEFVSCLAFVPAQECPQSLLLSGSGDSTVRLWDISSGALLDTCEVAIKSDRFLSLCVVTFGFYFLVLHLLFLKAGLLESSDKAEEHAHAVTDLCTTLDGLLVAVAVQRQVSSYLVLSYFSSGEFSISLLTSFFDTTVVSIAGEAFVPTCLGNIPSTRNLWMVTGVSSLPGCNYPSLARVRVISGIDVEQEPIVLGDDKIPGGEKLLETLQGTASVDDNAFLAAAEAVKTAMCNLLIKKQYPAENRESRKKTRNDKKLKG. 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04270 763 SUPERFAMILY Kelch motif 61 337 IPR015915 GO:0005515
Seca2g04270 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 546 IPR001680 GO:0005515
Seca2g04270 763 Pfam WD domain, G-beta repeat 369 398 IPR001680 GO:0005515
Seca2g04270 763 Pfam WD domain, G-beta repeat 501 537 IPR001680 GO:0005515
Seca2g04270 763 Pfam WD domain, G-beta repeat 454 483 IPR001680 GO:0005515
Seca2g04270 763 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Seca2g04270 763 SMART kelc_smart 289 344 IPR006652 GO:0005515
Seca2g04270 763 SMART kelc_smart 161 208 IPR006652 GO:0005515
Seca2g04270 763 SMART kelc_smart 103 160 IPR006652 GO:0005515
Seca2g04270 763 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 310 755 IPR028884 GO:0036265
Seca2g04270 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 541 - -
Seca2g04270 763 Gene3D - 362 614 IPR015943 GO:0005515
Seca2g04270 763 PANTHER WD40 REPEAT PROTEIN 4 356 755 IPR028884 GO:0036265
Seca2g04270 763 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Seca2g04270 763 Pfam Kelch motif 277 330 IPR006652 GO:0005515
Seca2g04270 763 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Seca2g04270 763 SMART WD40_4 446 485 IPR001680 GO:0005515
Seca2g04270 763 SMART WD40_4 353 398 IPR001680 GO:0005515
Seca2g04270 763 SMART WD40_4 401 439 IPR001680 GO:0005515
Seca2g04270 763 SMART WD40_4 493 537 IPR001680 GO:0005515
Seca2g04270 763 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 412 697 - -
Seca2g04270 763 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 366 398 - -
Seca2g04270 763 Gene3D - 52 236 IPR015915 GO:0005515
Seca2g04270 763 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 398 IPR001680 GO:0005515
Seca2g04270 763 CDD F-box_AtAFR-like 4 48 - -
Seca2g04270 763 SMART fbox_2 8 48 IPR001810 GO:0005515
Seca2g04270 763 SUPERFAMILY WD40 repeat-like 366 609 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04270 Seca-Chr2 127199246 127206215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04270 8 188 Miscellaneous Gene Families AT4G33900 28.947 2.97e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04270 - - gmx:100800954 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04270 2 127199246 127206215 Seca2g04270 2 127199246 127206215 ECH