LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g04251	ATGCACCCATTAGCGGGAATCTCTTGGGAAGTCATTTCTGTCTGCTTGCCTCTCCTTTGCCTTTTAAACTCTTACCTTTCTCTCCAAATGTTGTATCATCACACTACCGCGAGGAAACACATCATGTCTTCTCATTCTCAATTCTCCACCCACTACCATCTTCCACCTCCCACCTCTTCTTCTTCTTCTAACCATTATTTCCCTTTCTCTCCTTCTTCTATCTCTCTTCACCACTTCTCCAAATCCTCTCTGTCTCTAGCTGGTGCTGTGGCTAAAGACAAACAAGAGAAAAGATGCAGAGCTATATCCAAATCAAGAACTCAAGACATATTTCAGAGTAGCCTAGCAACTTTAAAGTTTCCTGAGATTAATGTGGAGGATGACATAGATGAGGAGGAAGAGGAGGAGCAAGATATTGGGGTTTCTGTGACAAATGAGATCAAGAAACGAGTGGATGCTATCAAATCAATATTGCTTTCCATGGAAGATGGAGAGATAAGCATATCAGCTTATGACACAGCTTGGGTTGCTCTTGTTGAAGATGTTCATGGAAGTGGCACCCCTCAATTTCCTTCTAGTTTAGAATGGATAGCCAAAAACCAACTTCCTGATGGTTCATGGGGTGATAATCAATTATTTTCAGCTCATGATCGGATTATTAACACCTTGGCTTGTGTTATTGCATTAACATCATGGAATATGCACCCTGAAAAGTGTCAGAAAGGAATGACATTTTTTAGAGAGAATCTTAGCAAGCTTCAGAATGAGAGTGCTGAGCATATGCCAATTGGGTTTGAAGTTGCTTTCCCTTCACTTCTTGATATAGCTCGTGCTTTGAAGATTGAAGTACCAGATGATTCCCCTATATTGAATGACATCTTTGCAAAGAGAAATGAAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCCACAACTCTGCTTCATAGCTTGGAAGGGATGTCAGGACTGGACTGGAAACAACTTCTAAAACTGCAGTCTCAAGATGGATCATTCTTGTTTTCTCCATCTTCCACTGCCTTTGCACTCATGCAAACTAAAGATGAAAATTGCCTCAAATACTTGAATAAAGCAGTCAACAGGTTCAATGGAGGAGTTCCAAATGTGTATCCAGTGGATTTATTTGAACATATTTGGGTGGTTGATCGGCTAGAACGCCTTGGAATATCAAGGTATTTTCAGCAAGAGATCAAAGACTGTATGAGTTATGTTTACAGATATTGGACTGAAAAGGGAATTTGTTGGGCAAGGAATTCAAATGTTCAAGATATTGATGACACAGCAATGGGTTTCAGATTACTAAGATTACATGGCCACAAAGTTTCAGCCAATGTGTTTAAGCACTTTGAGAGAAATGGTGAATTCTTCTGCTTTGCTGGGCAATGCACACAAGCAGTGACAGGAATGTTCAATCTGTATAGGGCCAGTCAAGTAATGTTCCCAGGGGAGAAAATTCTTGAACATGCAAAGCAATTCTCAGCCAAGTTTTTGAGGGAGAAGAGAGCATCAAATGAGCTAATAGATAAATGGATCATAATGAAGAACTTGGCAGAGGAGGTGGGTTATGCATTGGACATGCCATGGTATGGAAATTTAGCTCGAGTGGAGACAAGATTCTACATAGATCAATATGGTGGTGAGAGTGACGTATGGATAGGCAAAACTCTTTACAGGATGGCCTATGTAAACAACAATAATTATCTTGAGCTTGCTAAATTAGATTACAACAATTGCCAAGCACAGCATCTAACAGAATGGGGGAGAATTCAGAAATGGTACTCAGAATCTAGATTGGGAGAATTTGGATTGAGCAGAAGGAGTCTTCTGTTGGCCTATTTTTTGGCAGCAGCAAGCATATTTGAGCCTGAAAGGTCTCATCAGAGACTTGCATGGGCCAAAACCACAGCTTTGCTTGAGACAATCACATCCTATGTTAGTGATGCAGAAATGAGGAAAGATTTTGTTAAAAAATTCAGTGAATGCATCAATAGGAGAGACTACTCCATTGGATGGAGGCTGAACAGGAATAAAACAGGACATGGACTAGCTGAGACTTTGGTTGCAACCATAGACCAAATCTCATGGGATATACTTGTGACTCATGGTCATGAAATTGGATATGATATGCATCACAGTTGGAAAAAGTGGCTTTCAAGTTGGGAAAGTGGAGGAGACAAATGTGAAGGACAAGCAGAGCTTTTGGTACAGATAATAAACCTAAGTGCAGGGCATTGGATTTCAGATCAGGAACAAATGTTCAATCCACAATACCAGCATCTCCTTCAACTCACTAACACAATCTGCCATAGACTTGGTTGCTATCAAAAGGACAAGGTCAGTGACAGGCAAGTGGAGAATGGCAGCTGCATAAACAGCATGATAACCCCAGAAGCAGAGTCAAAAATGCAAGAACTGGTGCAATTGGTGTTCCAAAATTCTCCAAGTGACATTGATTTCAATATCAAGAATACTTTCTTGACAGTGGCGAAGAGTTTTTACTATACAGCATACTGTGATTCAAGGACCATCAACTTCCATATTGCCAAAGTTCTCTTTGATAAAGTCGTTTAA	2598	0.4026	MHPLAGISWEVISVCLPLLCLLNSYLSLQMLYHHTTARKHIMSSHSQFSTHYHLPPPTSSSSSNHYFPFSPSSISLHHFSKSSLSLAGAVAKDKQEKRCRAISKSRTQDIFQSSLATLKFPEINVEDDIDEEEEEEQDIGVSVTNEIKKRVDAIKSILLSMEDGEISISAYDTAWVALVEDVHGSGTPQFPSSLEWIAKNQLPDGSWGDNQLFSAHDRIINTLACVIALTSWNMHPEKCQKGMTFFRENLSKLQNESAEHMPIGFEVAFPSLLDIARALKIEVPDDSPILNDIFAKRNEKLTRIPREMMHKVPTTLLHSLEGMSGLDWKQLLKLQSQDGSFLFSPSSTAFALMQTKDENCLKYLNKAVNRFNGGVPNVYPVDLFEHIWVVDRLERLGISRYFQQEIKDCMSYVYRYWTEKGICWARNSNVQDIDDTAMGFRLLRLHGHKVSANVFKHFERNGEFFCFAGQCTQAVTGMFNLYRASQVMFPGEKILEHAKQFSAKFLREKRASNELIDKWIIMKNLAEEVGYALDMPWYGNLARVETRFYIDQYGGESDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQAQHLTEWGRIQKWYSESRLGEFGLSRRSLLLAYFLAAASIFEPERSHQRLAWAKTTALLETITSYVSDAEMRKDFVKKFSECINRRDYSIGWRLNRNKTGHGLAETLVATIDQISWDILVTHGHEIGYDMHHSWKKWLSSWESGGDKCEGQAELLVQIINLSAGHWISDQEQMFNPQYQHLLQLTNTICHRLGCYQKDKVSDRQVENGSCINSMITPEAESKMQELVQLVFQNSPSDIDFNIKNTFLTVAKSFYYTAYCDSRTINFHIAKVLFDKVV.	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g04251	865	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	338	558	IPR008930	-
	Seca2g04251	865	Gene3D	-	170	382	-	-
	Seca2g04251	865	SUPERFAMILY	Terpenoid synthases	572	847	IPR008949	-
	Seca2g04251	865	FunFam	Ent-copalyl diphosphate synthase	170	382	-	-
	Seca2g04251	865	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	587	865	-	-
	Seca2g04251	865	Gene3D	Farnesyl Diphosphate Synthase	587	865	IPR008949	-
	Seca2g04251	865	FunFam	Ent-copalyl diphosphate synthase, chloroplastic	359	584	-	-
	Seca2g04251	865	Pfam	Terpene synthase, N-terminal domain	327	533	IPR001906	GO:0010333\|GO:0016829
	Seca2g04251	865	SUPERFAMILY	Terpenoid cyclases/Protein prenyltransferases	170	249	IPR008930	-
	Seca2g04251	865	Gene3D	-	154	585	IPR036965	GO:0010333\|GO:0016829
	Seca2g04251	865	Pfam	Terpene synthase family, metal binding domain	577	729	IPR005630	GO:0000287\|GO:0010333\|GO:0016829
	Seca2g04251	865	CDD	Terpene_cyclase_plant_C1	337	862	IPR044814	GO:0010333\|GO:0016102
	Seca2g04251	865	SFLD	Terpene Cyclase Like 1 N-term	142	567	-	-
	Seca2g04251	865	SFLD	Terpene Cyclase Like 1 N-term - Enzymatic	142	567	-	-
	Seca2g04251	865	PANTHER	ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC	144	862	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g04251	Seca-Chr2	126978814	126986823	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g04251	K04120		-	gmx:100784193	1351.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca2g04251	2	126978814	126986823	Seca2g04251	2	126978814	126986823	ECH