Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04239 ATGAGTGTTCATCTATCAGGGTTGTGGGTGCCCAACTCTCCAGCAATATCTGGAATTGTTCTTTCCAGCCGTAGCAGTGGCAGATTCTCCCAATCAGCTCTCGCTGCCACACCAACCCTCTCATCCCAATCTCCCACCATTCAGATAATTGGCGTGAAAGGCCATGGTTGGAGTGAAAATGGACATGTCAATCCCAACGGCAACACATTTGATGGTTGCCAAGGAGAGAATGATCATTGGACTGATCTTGACACTGATCTTTACCACTGGACAAAGGTCTTACGCCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAAGAATTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGGCGAATTCCCATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCAACTGAAGACCGCAATGATTGGGCAGCATATTTTTCTAGGCATGGCACAAAGATTGTCTTCTCCAATGGGCAGCTTGGAATGGGCACAATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAACGTAGAGCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGGATGTGCCCAGCAGCTCCCAGGCCAGGAGTCACTAGAGAATTGAGGTGGGTTCGTTTCGGGAAAGACCTTGAACTGCTGGATTCTCCCGGGATACTCCCAATGCGATTCAGTGATCAATCAGCAGCTATAAAACTCGCCATATGTGATGACATTGGAGAGAGGGCTTATGATGTGGCTGATGTTGCTGCAATTCTTGTGCAGATGCTTACAAAGCTTCCCACAGTAGGTGGAGAACCACTTCGTAAACGATACAAGATTGATGTAGATAGTCGATGTGGTAAAACATTCATAGAGAAGCTTGCGGTCCAAGTATTTAATGGAAACGTTCATCAAGCAGCATTTCGTGTGTTGTCAGATTTTAGGAAAGGTAGGTTTGGTTGGACTGCATTGGAGAGACCTCCTAGGTGA 1122 0.4545 MSVHLSGLWVPNSPAISGIVLSSRSSGRFSQSALAATPTLSSQSPTIQIIGVKGHGWSENGHVNPNGNTFDGCQGENDHWTDLDTDLYHWTKVLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTEDRNDWAAYFSRHGTKIVFSNGQLGMGTMKLGRLAKELAADVNVKRRAKGLLPRPVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRFSDQSAAIKLAICDDIGERAYDVADVAAILVQMLTKLPTVGGEPLRKRYKIDVDSRCGKTFIEKLAVQVFNGNVHQAAFRVLSDFRKGRFGWTALERPPR. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04239 373 Pfam 50S ribosome-binding GTPase 217 286 IPR006073 GO:0005525
Seca2g04239 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 286 IPR027417 -
Seca2g04239 373 CDD YlqF 99 270 - -
Seca2g04239 373 NCBIfam ribosome biogenesis GTPase YlqF 97 369 IPR019991 -
Seca2g04239 373 FunFam DAR GTPase 3 chloroplastic 97 270 - -
Seca2g04239 373 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 86 372 - -
Seca2g04239 373 FunFam Mitochondrial GTPase 1 275 363 - -
Seca2g04239 373 Gene3D - 97 270 IPR027417 -
Seca2g04239 373 PRINTS GTP1/OBG GTP-binding protein family signature 263 278 IPR006073 GO:0005525
Seca2g04239 373 PRINTS GTP1/OBG GTP-binding protein family signature 217 237 IPR006073 GO:0005525
Seca2g04239 373 Gene3D - 274 363 IPR023179 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04239 Seca-Chr2 126697511 126702694 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04239 K19828 - gmx:100784201 623.239