Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04198 ATGGCAAATCTCGTGCCATCGTTCTCATTCTCACTGATTCCTCTGAATCAGCACAAATACGGAACCAAATATTCATTCTTTCACAAATCCTTTATCCAAAGGAAGCAGCACCAACTTGTTAGTAGAAATTTGCAAGATCTCATCAACCCCTTTTCCCAGAATCTCACTTCAAAATTGTTCGCCACGTCACGGCTCTCTATCGAGGAAATTGAGCAGCAACTCACTCCCTTCACCAAACCCAAAGGCCTAAAAACGGCATTGCCTTATTTGTTCAGAACAGAAATCGGTAATGGTTTGGTGAGAGTTTACGTTACAAAGAAAAAAGTTAGTTATTCTGTGTATATTGAAATTTCTTCCTTTGATTTAAATGGTAGTAAAGGGGAAACATTGGTGTTGTGTTGGGGTGTGTATAGAGCAGATTCATCGAGTGTAGATGGGAGAACAGGGATGAGTGTGAGTCCCTTTGTGCAAACTTCTTTGGGAAAGTTTGCAGTTGAGTTGGAATTTGATGCTAAACAAGTTCCCTTGTACTTGTCATTTTTGTTGAGATCATCATTTGATGATGGGTTGGAAATCAGAAGCCATAGGAAAAAGAATTTCTGTGTGCCTGTTGGTTCTCTTCCTGGGTACCCTGGTCCTCTGGGGCTCTCTTTTTCCCCTGATGGGTCTATGAATTTTGCTGTTTTTTCAAGACATGCAGAGAGTGTGGTCTTGTGCTTGTATGATGACAGTGGTGTGGAGAAGCCTGCTTTGGAGCTTGAATTGGATCCTTATGTTAATAGGTCAGGTGATGTTTGGCATATCTCGTTTGAGAGTGCCTGGACTTTTGTGAGCTATGGTTATCGCTTCAGAAATAAGTGTAAGGATAATAGTTATGCTGAGAATGTTGTTTTGGATCCCTATGCTAGGATTATTGGGAATTCTTATCATAATGGTATTGGATCAGTGAAGAATCTTGGAAGGTTGGGGAAGGAACCTGCTTTTGACTGGGGTGATGATTGTCATCCAAATTTGTCCATGGAGAAATTAGTGGTGTATAGGTTGAATGTGAAGCGCTTCACGGAGCAAGAGTCCAGCCAACTTCCAAGTGATTTAGCTGGGACATTTTCTGGTTTGGCTAAAAAGGTGCAGCATTTTAAAGATCTGGGTGTGAATGCTGTTCTGTTGGAGCCAGTTTTCACATTTGATGAGGAAAAAGGACCATATTTTCCTTGTCATTTTTTTTCTCCAATGAATGTTTATGGACCATCTGGTGGTCCTGTGTCTTCTATCACCTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTGCACATGGAAGTTGTTTTCTCCAATACTGCTGAGATCGGTGCTCTGCAAGGAATTGATGATTTATCCTACTATTATGCAAATGGAATTGGTGATTTGAAGTTACAGAGTGCTTTGAATTGTAACTATCCTATAGTGCAAAATTTGATTCTGGATAGCCTCCGGCATTGGGTAACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACATCTGTTGAGGGGGTTTCATGGAGAATACTTGTCTCGACCTCCATTAGTTGAAGCAATTGCTTTTGACCCAGTACTGTTGAAGACTAAAATCATTGCAGATTGCTGGGATCCCCATGACATGGTAGCAAAGGAAAATCGCTTTCCTCATTGGATGAGATGGGTTGAAATAAATACAAATTTTTGTAATGATGTGAGAAACTTTTTAAGGGGTCAAAATCTTCTTAGCAACCTTGCAACAAGACTTTGTGGGAGTGGGGACATGTTTTCTGATGGAAGAGGCCCTACATTCTCTTTTAATTACATTTCCAGGAACGTTGGACTTTCTCTTGTGGACTTAGTCAGCTTCAGCAATGATGATCTAGCGGCAGAGTTAAGTTGGAATTGTGGAGAAGAAGGACCTACTAATAACACTACTGTCCTTGAAAGAAGACTCAAACAAATCCGTAATTTCCTCTTCGTCCTGTTTGTGTCATTAGGAGTACCTGTTCTGAACATGGGAGATGAGTGTGGGCAGTCTTCTGGTGGTTCTCCTGCATATGGTGACATAAAACCTTTCAATTGGGGTGCTTTGAAAACAGGTTTTGGTAAACAAACCACACAATTCATTTCCTTTTTAACTTCATTGAGAAGGAGGCGGAGTGATCTTCTCCAGAGTAAGAGCTTCTTGAAAGAAGACAACATTGAATGGTGCGGAAGTGACCAGGCTCCACCTAGATGGGAAGACCCTAACTGCAAGTTCCTGGCCATGACTTTGAAGGCTGAAGAAATGGAGTTCTCAGAAAGCTCTGTATCTTCTGACATATCAGGGGATTTATTTATTGCTTTCAATGCAGCTGATCATCAAGAAACTGTAGTTTTACCCCTGCCTCCAGAAGGGATGTCATGGTACCGTTTAGTTGATACAGCTCTTCCATTTCCTGGGTTTTTCTCCACCAGTGGTGAAGTTGTCCCTGAGCAGATACCAGGTTTGTCTACTTATCAAATGAAGTCTTACAGCTGCACTTTGTTTGAGGCAAAAAGTGGTACCAGTTGA 2571 0.4123 MANLVPSFSFSLIPLNQHKYGTKYSFFHKSFIQRKQHQLVSRNLQDLINPFSQNLTSKLFATSRLSIEEIEQQLTPFTKPKGLKTALPYLFRTEIGNGLVRVYVTKKKVSYSVYIEISSFDLNGSKGETLVLCWGVYRADSSSVDGRTGMSVSPFVQTSLGKFAVELEFDAKQVPLYLSFLLRSSFDDGLEIRSHRKKNFCVPVGSLPGYPGPLGLSFSPDGSMNFAVFSRHAESVVLCLYDDSGVEKPALELELDPYVNRSGDVWHISFESAWTFVSYGYRFRNKCKDNSYAENVVLDPYARIIGNSYHNGIGSVKNLGRLGKEPAFDWGDDCHPNLSMEKLVVYRLNVKRFTEQESSQLPSDLAGTFSGLAKKVQHFKDLGVNAVLLEPVFTFDEEKGPYFPCHFFSPMNVYGPSGGPVSSITSMKEMVKTMHANGIEVHMEVVFSNTAEIGALQGIDDLSYYYANGIGDLKLQSALNCNYPIVQNLILDSLRHWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLLKTKIIADCWDPHDMVAKENRFPHWMRWVEINTNFCNDVRNFLRGQNLLSNLATRLCGSGDMFSDGRGPTFSFNYISRNVGLSLVDLVSFSNDDLAAELSWNCGEEGPTNNTTVLERRLKQIRNFLFVLFVSLGVPVLNMGDECGQSSGGSPAYGDIKPFNWGALKTGFGKQTTQFISFLTSLRRRRSDLLQSKSFLKEDNIEWCGSDQAPPRWEDPNCKFLAMTLKAEEMEFSESSVSSDISGDLFIAFNAADHQETVVLPLPPEGMSWYRLVDTALPFPGFFSTSGEVVPEQIPGLSTYQMKSYSCTLFEAKSGTS. 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04198 856 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 213 302 IPR004193 GO:0004553|GO:0005975
Seca2g04198 856 Pfam Alpha amylase, catalytic domain 367 451 IPR006047 GO:0005975
Seca2g04198 856 SUPERFAMILY Glycosyl hydrolase domain 737 852 - -
Seca2g04198 856 CDD AmyAc_plant_IsoA 339 730 IPR044096 GO:0019156|GO:0019252
Seca2g04198 856 Gene3D - 738 856 IPR013780 -
Seca2g04198 856 PANTHER GLYCOGEN DEBRANCHING ENZYME 173 852 - -
Seca2g04198 856 SUPERFAMILY (Trans)glycosidases 328 726 IPR017853 -
Seca2g04198 856 CDD E_set_GDE_Isoamylase_N 213 347 IPR044505 -
Seca2g04198 856 Gene3D Glycosidases 324 737 - -
Seca2g04198 856 SMART aamy 347 725 IPR006047 GO:0005975
Seca2g04198 856 Gene3D Immunoglobulins 199 318 IPR013783 -
Seca2g04198 856 SUPERFAMILY E set domains 208 336 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04198 Seca-Chr2 126251799 126254369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04198 42 856 Glycoside Hydrolase AT1G03310 57.245 0.0 942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04198 K01214 - gmx:100777953 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04198 2 126251799 126254369 Seca2g04198 2 126251799 126254369 ECH