Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04183 ATGAGAGGGATACAGTTACCGTTGAGCCAAACTCAGAAGCTTCGTCTTCAGAAGGCTCTGGAACAGCTTGAGTCTCTCTCGTCGAAGGTTAATTCCGATGCTTCCGTCACCATTGCCGATTCCATCCCCGTCAACCACGAAGACGGCGTCCTCAAGGGTCACGGAACCGTCGACCTCAATGGCGAAGTCGTTGCTACTCTCTGCGGTGTCGTCGAGCGCGTTAACAAGCTCGTCTATGTCCGCGCGTTGCGCTCCAGGTACAAACCTGAGGTTGGTGACATCGTTATAGGGCGTGTTATTGAGGTTGCTCAGAAACGTTGGAGGTTGGACATAAATTACAGTCAAAATGCGTTTTTGATGCTTTCTTCTATGAATATGCCTGACGGTGTACAGAGGCGGAGGACAGCTGTAGATGAGCTAAATATGCGCAGTATTTTTGAGGAGAAGGATGTTGTTTGTGCAGAAGTTCGTGGTTTTCAGCATGATGGCTTACACCTTCAAGCAAGAAGTCAAAAATATGGAAAGCTTAATAGCGGTCAACTGCTTACAGTTCCACCTTATTTAGTAAAGAGACAAAAACAACATTTCCATCATCTAGAGCAGTATGGTGTTGATTTGATACTTGGCTGTAATGGATTTATATGGGTTGGGGAACATATTGAAGCCAGAGATGACATGATAGAAGATCAAGTGAACCAATCTGATTCACAAGTTTTATTGCCCAATAAAAACTCTGCGAGTCTCGAAGAACAAGAGAAAAATTATACAACATTGGAGACAAGAAAATACATATGCAGGGCTGCTAATGCAGTTAGATTATTATCGACTTTGGGCTTCATTATTACACTGGAAATCATCAAGGGAATTATTGATCTAAGCCTTTCACTGAATCTTGATATACACGACATGCTTGGTTCTGAGTTCTGTGTTCTGGTTGCCGAAAGAGAGGCAGAAAGGAGAAGCTCAAACAAAAAGAAGCGGTAG 984 0.436 MRGIQLPLSQTQKLRLQKALEQLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTVDLNGEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAFLMLSSMNMPDGVQRRRTAVDELNMRSIFEEKDVVCAEVRGFQHDGLHLQARSQKYGKLNSGQLLTVPPYLVKRQKQHFHHLEQYGVDLILGCNGFIWVGEHIEARDDMIEDQVNQSDSQVLLPNKNSASLEEQEKNYTTLETRKYICRAANAVRLLSTLGFIITLEIIKGIIDLSLSLNLDIHDMLGSEFCVLVAEREAERRSSNKKKR. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04183 327 PANTHER PNAS-3 RELATED 32 319 IPR026699 GO:0000178|GO:0003723
Seca2g04183 327 Gene3D - 36 87 - -
Seca2g04183 327 Coils Coil 9 29 - -
Seca2g04183 327 Pfam KH domain 179 219 IPR004088 GO:0003723
Seca2g04183 327 SUPERFAMILY Ribosomal L27 protein-like 44 82 - -
Seca2g04183 327 Gene3D - 88 177 IPR012340 -
Seca2g04183 327 SMART S1_6 90 169 IPR022967 -
Seca2g04183 327 SUPERFAMILY Nucleic acid-binding proteins 85 176 IPR012340 -
Seca2g04183 327 CDD KH-I_Rrp4_eukar 179 317 - -
Seca2g04183 327 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 179 322 IPR036612 GO:0003723
Seca2g04183 327 FunFam Exosome complex component RRP4 87 177 - -
Seca2g04183 327 CDD S1_Rrp4 86 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04183 Seca-Chr2 126053977 126058116 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04183 K03679 - gmx:100776358 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04183 2 126053977 126058116 Seca2g04183 2 126053977 126058116 ECH