Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04180 ATGATTGGTGCAATAACAAGTGGGCCTATTGCTGATTTTATTGGACGAAAAGGGGCAATGAGAGTGTCAAGTGCTTTTTGTGTGGCAGGGTGGCTTGTTATTTACTTTTCTGAGGGCCCAGTGCCTTTGGACATTGGAAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTTTTCGTAGCAGAAATTGCACCAAAAGAACTCCGTGGGACACTGACCACCTTAAATCAGTTCATGATTGTTACTGCAGTATCTGTGTCATTCATAATTGGAAATGTACTTTCATGGAGGGTGTTAGCTTTAATTGGCCTCATTCCCACTGCTGTATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCTAGATGGTTGGAAAAGAGAGGACGTGTAAAAGATTTTGAGGAAGCACTGCAGATACTTCGTGGAAGAGATGCTGATATATCTGAGGAGGCAGAGGAAATTCAGGATTATATAACTACATTAGAACGGCTCCCAAAACCCAAGCTGCTGGATTTGTTACAAAGAAGATATCTGCGCTCTGTCACTATTGGAGTAGGGCTTATGGTCTGCCAGCAATTTGGTGGAATCAATGGAATTTGCTTTTATACAAGCAGTATTTTTGAGCTAGCAGGATTTTCTGCCACCATCGGGACTATAATATATGCCTGCCTTCAGATTGTGGTCACTGGTGTTGGAGCAGCCTTAATAGATAAAGCTGGCAGGAAGCCCCTACTAGTGTTATCTGGATTAGGATTGGTTGCAGGATGTATATTTACAGCAGTTGCATTCTATCTCAAGGATCATGAGGTGGGTGTGGGGGCAGTCCCGGAACTTGCTTTAACTGGCATACTGGTCTACATAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCAGAGATATTTCCTGTCAATATTAAAGGCCGGGCAGGAAGCATAGCCACATTAGTGAACTGGTTTGGTGCATGGTTATGTTCTTATACTTTCAACTTTCTCATGAGCTGGAGCTCCTATGGTACCTTCATTCTTTATGCTGCAATCAATGCACTAGCTATATTATTTATAGTTGTAGCAGTGCCAGAAACCAAGGGCAAAAGCCTGGAACAATTGCAAGCAGCCATTAACGCGTAG 1158 0.4292 MIGAITSGPIADFIGRKGAMRVSSAFCVAGWLVIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFVAEIAPKELRGTLTTLNQFMIVTAVSVSFIIGNVLSWRVLALIGLIPTAVLLLGLFFIPESPRWLEKRGRVKDFEEALQILRGRDADISEEAEEIQDYITTLERLPKPKLLDLLQRRYLRSVTIGVGLMVCQQFGGINGICFYTSSIFELAGFSATIGTIIYACLQIVVTGVGAALIDKAGRKPLLVLSGLGLVAGCIFTAVAFYLKDHEVGVGAVPELALTGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGRAGSIATLVNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIVVAVPETKGKSLEQLQAAINA. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04180 385 CDD MFS_GLUT6_8_Class3_like 1 378 IPR044775 GO:0008643|GO:0051119
Seca2g04180 385 FunFam sugar transporter ERD6-like 6 1 383 - -
Seca2g04180 385 NCBIfam sugar porter family MFS transporter 1 378 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 ProSitePatterns Sugar transport proteins signature 1. 237 254 IPR005829 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 PANTHER - 1 380 - -
Seca2g04180 385 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 372 IPR020846 GO:0022857
Seca2g04180 385 Gene3D MFS general substrate transporter like domains 1 384 IPR036259 -
Seca2g04180 385 ProSitePatterns Sugar transport proteins signature 1. 7 24 IPR005829 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 PRINTS Sugar transporter signature 196 206 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 PRINTS Sugar transporter signature 285 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 PRINTS Sugar transporter signature 308 320 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 PRINTS Sugar transporter signature 44 63 IPR003663 GO:0016020|GO:0022857|GO:0055085
Seca2g04180 385 SUPERFAMILY MFS general substrate transporter 1 379 IPR036259 -
Seca2g04180 385 Pfam Sugar (and other) transporter 1 381 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04180 Seca-Chr2 126032138 126037567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04180 1 384 Organic Solute Cotransporters AT5G18840 59.740 9.32e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04180 K03444 - gmx:100819822 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04180 2 126032138 126037567 Seca2g04180 2 126032138 126037567 ECH
Seca2g04180 2 126032138 126037567 Seca2g05363 2 140130954 140131946 ECH