Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04176 ATGGACATTTCTTCTTATTCTATTCTTTTCATTTGCTTCTTGCAATCCGCGCGAGCCATTTTGGAACCAAATGATTTCTTGGCTCTTCAATCCATTCGAAAGGCACTTCACGATGTTCCTGGTTCTAATTTCTTCGCTTCTTGGGACTTCACCGCCGATCCTTGCAACTTCGCCGGCGTTTACTGCGCCGCTGATAAGGTTATCGCGCTCAATCTCGGCGATCCGAGAGCAGGTTCGCCTGGACTCACCGGAAAAATAGATACGGCCATTGGCAAGCTCTCTGCTCTCGCTGAAGTCACCGTCGTTCCTGGCCGGATTTACGGTCCTCTTCCTCAGTCACTCTCTCAATTGAAGAACCTCCGGTTCCTCGGCATCAGCCGGAATTTCATCTCCGGCGAGATTCCGGCGGAACTCGGTCAGCTTCGTAATCTCAGAACCATCGATTTCAGTTACAACCAGCTCGCCGGAGTAATTCCTCCGTCCATCGGAAAATTACCGGAGCTAACCAACCTGATCCTCGGCCATAACCGCCTCTCCGGTTCAGTTCCATCGTTCGCTTCGGCTCAGTCTTTAACCCGGCTCGATCTCAAACACAACTCTCTCTCCGGTTCGCTTGGACCAGATTCTCTCCCTCCTTCCCTACAGTACCTTTCTCTATCATGGAACCGGCTCACTGGACCGGTAGAGCTTGTACTAAACCGGCTCAATAAGCTTAACTACCTTGACCTCAGCTTGAACCGGTTCACGGGCTGCATCCCGAATCAGTTATTCTCTTTCCCTCTTACTAATCTGCAATTAGAAAGGAACTTATTTTCTGGTCCGGTCCAACCGGTAAATGAGGCTACGATCCAAACCGTTGATCTCAGTTACAACCGGTTATCCGGTGAAGTGTCTCCTTTACTAGCTAGCGTGCAGAATCTGTATCTGAACAATAACGGGTTCACGGGTCAGGTTCCCGGTAGTTTCGTGGAGCGGTTATTAGAGGCGAGTATACAGATACTGTATTTGCAGCACAATTACCTGACCGGAATCGCGATAAATCCGACGGCGGAGATTCCGGTGAGTAGCTCGCTGTGTTTGCAGTATAATTGCATGGTGCCACCTATTCAGATGACATGTCCCTTCAAAGCTGGCACCCAGAAAATCAGACCTGCGCAGCAGTGCAACCATTGA 1173 0.4996 MDISSYSILFICFLQSARAILEPNDFLALQSIRKALHDVPGSNFFASWDFTADPCNFAGVYCAADKVIALNLGDPRAGSPGLTGKIDTAIGKLSALAEVTVVPGRIYGPLPQSLSQLKNLRFLGISRNFISGEIPAELGQLRNLRTIDFSYNQLAGVIPPSIGKLPELTNLILGHNRLSGSVPSFASAQSLTRLDLKHNSLSGSLGPDSLPPSLQYLSLSWNRLTGPVELVLNRLNKLNYLDLSLNRFTGCIPNQLFSFPLTNLQLERNLFSGPVQPVNEATIQTVDLSYNRLSGEVSPLLASVQNLYLNNNGFTGQVPGSFVERLLEASIQILYLQHNYLTGIAINPTAEIPVSSSLCLQYNCMVPPIQMTCPFKAGTQKIRPAQQCNH. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04176 390 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Seca2g04176 390 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Seca2g04176 390 SUPERFAMILY L domain-like 47 367 - -
Seca2g04176 390 Gene3D Ribonuclease Inhibitor 188 382 IPR032675 -
Seca2g04176 390 FunFam Nuclear pore complex protein NUP107 22 184 - -
Seca2g04176 390 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Seca2g04176 390 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 14 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04176 Seca-Chr2 125937493 125938665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04176 25 369 Receptor kinase-like Gene Family AT3G51740 33.333 8.72e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04176 - - gmx:100817314 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04176 2 125937493 125938665 Seca2g04176 2 125937493 125938665 ECH
Seca2g04176 2 125937493 125938665 Seca2g04176 2 125937493 125938665 PCT