Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04174 ATGAGTTCCTCAGATGCAGCAGCCAAAATCACCAAAGGTGGAAGGGGCAAACCCAAGGCTACAAAGTCCGTCTCTAGGTCTTCCAAAGCCGGCCTTCAATTTCCCGTTGGCCGTATCGCTCGCTTTCTCAAAGCCGGTCGCTACGCTCAGCGTGTTGGTTCAGGATCCCCTGTTTATCTCTCTGCCGTTCTCGAATACCTTGCTGCTGAGGTTTTGGAGCTTGCTGGAAACGCTGCGAGGGATAACAAGAAGACGAGGATCATTCCTAGGCACATTCAACTTGCTGTGAGAAACGATGAGGAACTGAGCAAGCTGATGGGTTCTGTGACCATTGCTAATGGAGGTGTTCTCCCAAACATTCACCAGAATTTGTTGCCCAAAAAGGTTGGCAAGGGCAAAGGCGAAATTGGATCTGCTAGTCAAGAGTTCTAG 432 0.5 MSSSDAAAKITKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKVGKGKGEIGSASQEF. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04174 143 FunFam Histone H2A 12 135 - -
Seca2g04174 143 CDD H2A 16 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Seca2g04174 143 MobiDBLite consensus disorder prediction 1 27 - -
Seca2g04174 143 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Seca2g04174 143 PANTHER HISTONE H2A 15 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 Gene3D Histone, subunit A 10 135 IPR009072 GO:0046982
Seca2g04174 143 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Seca2g04174 143 Pfam Core histone H2A/H2B/H3/H4 12 97 IPR007125 GO:0003677
Seca2g04174 143 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Seca2g04174 143 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04174 Seca-Chr2 125818705 125819229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04174 K11251 - twl:120004272 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04174 2 125818705 125819229 Seca2g04174 2 125818705 125819229 ECH