Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04148 ATGGACGAAGAAGAAGAGCAGCAGAAGCTTCCAGATCTGGTTAAGGAACTCGTCCACCGTTTACTCCGTCAAAACCTTCCCCCCGATTCTCCACCCTTAAACCCTAACTCCCCTCAATTCCAAAACTCCCTCCGTTACGCTCTCCGCATTCTCTCCAGCCGTCTCACTCCCTCCGTCGCACCCGACGCCGCCGCCATCGCCGAGTCCATCAAGCGCCGCCTCGCCACTCAAGGCCGTTCCTCCGAAGCCCTCTCCTTCGCTGACCTCTACACCAAATTCGCTTCCAAAGCCACCAGCGTCAACAACAAATGGGCCGTCCTCTACCTCCTCAAAATCATCTCCGAAGATCGCAAAACCTCCAAGGCCCAGGTCCAATTCGATTCCGCATCCGTTCTCCTCCCCAATCTAACCTTATCCGATACCGCACCACGCCGTGACAACGAAAAGGGATGGAACGACGGCGTTTTGCTACTCGCCAAGGATCCCGAGAATCGCCGCGACATCGCGTTTCGCGAGTTCGTGAATTTGGTCAGGGAAGAAAGCGAGGTCTCAGAGGAGATTCTTGTGAAGGACGTGCTCTATGCTTGTCAAGGAGTTGATGGTACGTATGTGAAATTTGAAAGTGAGAAGAATATGTATGCTTTATCGGATTCGATTAGGGTAACTAGGTCTACTAGGAGTATGGTTCACAAGCTTTGTGAATTGGGGTTTTTGTTTAAGAAGGTTACTGGGTACATATCACAGAGTATGGATCGGTTTCCGGCTGAAGATGTTGGAACCGTTGGGCAGGCTTTTTGTTCTGCATTGCAGGATGAGCTTGGTGAGTATTACAAATTGTTGGCAGTGCTTGGGGCTCAGTCTTCGAATCCGATTCCTTTGGTTTCTGAATCTGCTAGTTCAGGGAATTATCTTTCTTTGAGGAGATTGGCTGTTTGGCTTGCGGAGCCAATGGTGAAGATGAGGCTGATGGGTGATTTGGTTGATAGGTGTAGGGTTTTGCGTGGTGGGGCAATGGCTGGTGCGATTCATTTGCATGCTCAGCATGGTGATCCGCTGGTTCATGAGTTCATGAGGAGATTGCTGCAGAGGGTGTGTTCTCCTCTGTTTGAGATGGTGAGGAGGTGGGTTTTGGAAGGGGAGTTAGAGGATATCTTTGCTGAGTTTTTCATTGTTGGGCAGCCGGTGAAAGCGGAATCCCTTTGGAGAGAAGGATATAGGCTCCATGATACCATGCTTCCTTCCTTCATTTCGCCTTCTCTTGCGCAGCGGATCTTGAGGACTGGAAAGTCCATAAATTTTCTTCGCGTTTGCTGTGAGGATCGTGGTTGGGCTCATGCTGCAAATGAAGTTGCCACTGATACAGGGGCTACGGCAAGAAGAGGTGGCTTTGGTTATGGTGAAACTGATACCCTTGAGTCCTTGGTTGATGAAGCTGCAAAAAGAATTGACAAGCATCTGTTGGATGTAATTTACAAGAGGTACAAATTCAAAGAGCATTGTCTTGCAATTAAGCGGTATTTGTTGCTTGGCCAAGGTGATTTTGTGCAATATCTAATGGATATTGTTGGGCCTGAGCTTTCTGAGCCAGCTAATACCATTAGCTCTTTCAAACTTTCGGGATTGTTGGAAACTGCAATTCGAGCATCCAATGCTCAATATGATGATCCTGACATTTTGGATAGGCTAAGGGTCAAAATGATGCCACATGAAAGTGGTGATAGAGGCTGGGATGTATTTTCACTGGAATATGATGCAAGAGTTCCACTAGATACTGTGTTCACAGAGTCTGTGATGGCAAGGTATTTAAGAATTTTTAATTTTCTATGGAAGCTTAAAAGAGTGGAACATGCGCTTACTGGTGCATGGAAGACCATGAAACCAAACTGCATTACCTCTAATTCCTTTACCAGACTGCAACATGCAGTAAAGATGCAGTTGGTTTCAACATTGAGACGCTGCCAGGTTCTTTGGGTTGAAATTAATCACTTTATTTCAAATTTGCAATACTATATAATGTTTGAAGTATTGGAGATCTCGTGGTCAAACTTTTTAAGTGAGATGGAAGTAGCCAAGGATCTTGATGATTTACTTGCAGCTCATGAGAAATATCTGCATTCAATTGTAGAGAAATCTCTCCTTGGAGAGCTTTCCCAGTCCCTTTACAAGTCACTATTAGTAATATTCGATCTTATATTACGTTTCCGGAGCCATGCTGATCGGTTGTATGAAGGTATTCATGAGTTGCAAGCAAGAATAACAGAATCCTCCTTGTCCTCTCGAGACCAGAATAAATCACGAAAGCAACTGAATGATAAGTCTGCAGAACAAGGATCCTGGATTGCTGATGGGAGGAAAGCCCTAACACAACGTGCTGGTGAATTTCTTCGAAATATGGGACAAGATCTGGATGCAATTGCTAAGGAGTACTCATCATTGCAAGAGGGATTCATTTCCCAGTTACCTGTACAGCAGCATGTTGATCTAAAGTTTCTCTTTTTCCGTCTTGACTTCAATGAATTTTATAGGCGGTTGTGTCCTAGCATATAG 2547 0.455 MDEEEEQQKLPDLVKELVHRLLRQNLPPDSPPLNPNSPQFQNSLRYALRILSSRLTPSVAPDAAAIAESIKRRLATQGRSSEALSFADLYTKFASKATSVNNKWAVLYLLKIISEDRKTSKAQVQFDSASVLLPNLTLSDTAPRRDNEKGWNDGVLLLAKDPENRRDIAFREFVNLVREESEVSEEILVKDVLYACQGVDGTYVKFESEKNMYALSDSIRVTRSTRSMVHKLCELGFLFKKVTGYISQSMDRFPAEDVGTVGQAFCSALQDELGEYYKLLAVLGAQSSNPIPLVSESASSGNYLSLRRLAVWLAEPMVKMRLMGDLVDRCRVLRGGAMAGAIHLHAQHGDPLVHEFMRRLLQRVCSPLFEMVRRWVLEGELEDIFAEFFIVGQPVKAESLWREGYRLHDTMLPSFISPSLAQRILRTGKSINFLRVCCEDRGWAHAANEVATDTGATARRGGFGYGETDTLESLVDEAAKRIDKHLLDVIYKRYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLSGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLKRVEHALTGAWKTMKPNCITSNSFTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEISWSNFLSEMEVAKDLDDLLAAHEKYLHSIVEKSLLGELSQSLYKSLLVIFDLILRFRSHADRLYEGIHELQARITESSLSSRDQNKSRKQLNDKSAEQGSWIADGRKALTQRAGEFLRNMGQDLDAIAKEYSSLQEGFISQLPVQQHVDLKFLFFRLDFNEFYRRLCPSI. 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04148 848 Gene3D - 497 840 IPR042241 -
Seca2g04148 848 Pfam Gamma tubulin complex component N-terminal 189 492 IPR041470 -
Seca2g04148 848 Pfam Gamma tubulin complex component C-terminal 498 841 IPR040457 GO:0043015
Seca2g04148 848 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 11 841 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04148 Seca-Chr2 124989957 124994800 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04148 K16570 - gmx:100784710 1471.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04148 2 124989957 124994800 Seca2g04148 2 124989957 124994800 ECH