Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04092 ATGGCGCCAAGATGGAAAGGAAAAGATGCAAAAGCTAAAAAGGATGCAGAAGCTGAAGCACTAAAAGAACCCATGTCAAAGATTATATCTCAACTTCAGTCTTCACTAGTTCAATCAGATACTTGTGGGTTTCTCTCTGATAACAGTGTACACTTAGCAGTTGGATCAGAACAAATTGATCTTCTTGATAAAGCTTGCTTTGGTCGACCTGTGAGAACAGTTGAAAAGGATACACACTGGTTCCAATTAAGCTTGGAGGAAGCATTCTATCTATGCTATTCCTTGAAATGCCTCAAGATTAATGGCGATGATACTGGTCCCCAAAATGATGAAGAACTATGGCATTACATGAAGTCCAAGAAAGAAACATTCCCTTGTTTCTACAAGGCTTATTCTCACCTTCGAATGAAAAATTGGGTAGTAAGGTCAGGGGCTCAGTATGGTGTAGACTTCATTGTCTATCGTCATCATCCAGCTCGGGTCCATTCTGAGTATGGTGTACTTGTTCTATCAGATGAGGATGATAAATATCTAAATGGAAGATTGAGAGTATGGTCTGATGTTCATTGCACAACTCGACTTCTTGGAAGTGTTGCAAAAATCTTATTGGTTCTTTATGTCAATAAAAATGGTAACAGTGATGAGTCTCCTTTATGTTTGGCAAACTATACTGTTGAAGAGCGCACAATCACTAGATGGAGTCCAGAACAATGCCGTGAAAGATGTAATTCATGCTAA 738 0.3902 MAPRWKGKDAKAKKDAEAEALKEPMSKIISQLQSSLVQSDTCGFLSDNSVHLAVGSEQIDLLDKACFGRPVRTVEKDTHWFQLSLEEAFYLCYSLKCLKINGDDTGPQNDEELWHYMKSKKETFPCFYKAYSHLRMKNWVVRSGAQYGVDFIVYRHHPARVHSEYGVLVLSDEDDKYLNGRLRVWSDVHCTTRLLGSVAKILLVLYVNKNGNSDESPLCLANYTVEERTITRWSPEQCRERCNSC. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04092 245 CDD tRNA-intron_lyase_C 128 212 IPR006677 GO:0000213|GO:0006388
Seca2g04092 245 PANTHER TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 3 75 IPR006676 GO:0000213|GO:0006388
Seca2g04092 245 Pfam tRNA intron endonuclease, N-terminal domain 43 114 IPR006678 GO:0000213|GO:0006388
Seca2g04092 245 Pfam tRNA intron endonuclease, catalytic C-terminal domain 128 212 IPR006677 GO:0000213|GO:0006388
Seca2g04092 245 FunFam tRNA-splicing endonuclease subunit Sen2-1 123 219 - -
Seca2g04092 245 SUPERFAMILY tRNA-intron endonuclease catalytic domain-like 123 212 IPR036167 GO:0006388
Seca2g04092 245 Gene3D - 123 217 IPR011856 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04092 Seca-Chr2 123626995 123627732 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04092 K15322 - gmx:100810335 412.535