Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04089 ATGGACAAGCCGCTACTCTTCTTCATCTTCTTATTTCTTCTCACCCAATCACTACTCGCCACGTCACACCCTCCAAACCCCATACCACTTACCGTTTCCGTGGCCAACTTCGGAGCCGCCGGCGACGGCGTCCGCTACGACACGGCGGCAATCCAGTCGGCCATCAACTCCTGTCCGACCGGCTGCCCCTGCCAAGTCACCTTCCCGGCGCCGGGGAAGTACCTGACGGCGACCGTGTTCCTGAAGTCCGGCGTGATGCTGAACGTGGAGCCCGGCGCCACCATCCTTGGCGGCGCGAGGCAAGAAGATTACCCGAAGGACTCTTCGCGGTGGTACGTGGTACTGGCGGAGAACGCTACGGACGTCGGAATCGGCGGCGGCGGCGTGGTGGATGGTCAGGCGGAGAAGTTCGTGGTGAGAAAAGATCCGAGGAAGAACATCATGGTGAGCTGGAACAAAACAGGGTCTTGTTTAGGTGATGAATGCAGACCTAGACTCATCGGTTTCCTTGGTTGCAATAATGTTAAAGTCTCCAACATTATCCTCAATCAACCTGCTTATTGGTGTTCATCAATTTCTTTAACAAATTGCATACTAAAGCCTAAGAAACAGAGTTTTATACTAACTTGCAGCTTACACTTGGTACGGAGTGATAAAATATCCATTCATGATATTGCAATTTATGGTGACTTCAATATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACTGTAATCACTCGATGCCACATTGATACAGGCGATGATGCAATCTGTCCAAAGTCATCCACTGGTCCTGTTTACAACCTGACAGTCACTAACTGTTGGATTCGAAGCAAATCCTCTGCAATTAAATTTGGCAGTGCTAGTGTGTTTGATTTCAAGTATTTTGTGTTTGACAATATCACTATTGTTGATTCTCACAGAGGGCTTGGATTCCAAATCCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAATATCAGCACAAGATACTATGACCCATTATGGTGGGGGAGAGCGGAGCCTATTTATGTCACAACTTGCCCACGGGACTCAACCTCAAAGGAGGGTTCAATATCAAATGTTCTTTTCATTAACATTACAGCAAACTCTGAAAATGGCATCTTTCTGTCTGGTTCAAAGAGAGGATTGTTGAGAAATTTGAGATTCATCAACATGAATATCACTTACAGAAGGTTCACCAATTATGCTGGTGGGTTATTTGACTATAGGCCAGGGTGCCAAGAATTGGTTAAACACAGGACTGCCGGCATTGTGATGGAGCACATTGAAGGTCTTGAGGTTAAAAATGTAGAAATGAGATGGTCAAAGTCAAACAAACAACTAGAGCAGTGGAATAATCCTATGGAGTTTAGGCCATCTACTGTGAATAATATCTATTTCTCTAATTTTAATTCTGTTTTGGATACAAAATAG 1458 0.4527 MDKPLLFFIFLFLLTQSLLATSHPPNPIPLTVSVANFGAAGDGVRYDTAAIQSAINSCPTGCPCQVTFPAPGKYLTATVFLKSGVMLNVEPGATILGGARQEDYPKDSSRWYVVLAENATDVGIGGGGVVDGQAEKFVVRKDPRKNIMVSWNKTGSCLGDECRPRLIGFLGCNNVKVSNIILNQPAYWCSSISLTNCILKPKKQSFILTCSLHLVRSDKISIHDIAIYGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPVYNLTVTNCWIRSKSSAIKFGSASVFDFKYFVFDNITIVDSHRGLGFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEGSISNVLFINITANSENGIFLSGSKRGLLRNLRFINMNITYRRFTNYAGGLFDYRPGCQELVKHRTAGIVMEHIEGLEVKNVEMRWSKSNKQLEQWNNPMEFRPSTVNNIYFSNFNSVLDTK. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04089 485 SUPERFAMILY Pectin lyase-like 8 417 IPR011050 -
Seca2g04089 485 Gene3D - 13 413 IPR012334 -
Seca2g04089 485 Pfam Glycosyl hydrolases family 28 58 404 IPR000743 GO:0004650|GO:0005975
Seca2g04089 485 PANTHER PECTIN LYASE-RELATED 27 447 - -
Seca2g04089 485 SMART pbh1 217 243 IPR006626 -
Seca2g04089 485 SMART pbh1 361 386 IPR006626 -
Seca2g04089 485 SMART pbh1 270 291 IPR006626 -
Seca2g04089 485 SMART pbh1 244 265 IPR006626 -
Seca2g04089 485 SMART pbh1 172 196 IPR006626 -
Seca2g04089 485 SMART pbh1 324 346 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04089 Seca-Chr2 123606223 123609592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04089 16 485 Glycoside Hydrolase AT3G57790 62.578 0.0 611
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04089 - - gmx:100794954 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04089 2 123606223 123609592 Seca2g04089 2 123606223 123609592 ECH