Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04073 ATGAGTATCTCATCCCTCAAGTTCGATTCTCACGCCATATGCAACCCTCACCGCCCCTTCACCTTCCATCACCATCGCACTCCAACACGAAGCGTCGTCGTTTGCTCCGCCAAGCCCGTCGCGCCTCCTCTCTCTAAACTCACCGCCGCCGACTCCTCCGCCGCTCGAATCGAGTCTCTGAGCCAGGTTTCCGGCGTTCTTGGTTGCCAGTGGGGTGATGAGGGCAAAGGGAAGCTCGTTGATATCTTAGCCCAACACTTCGAAATCGTTGCTCGCTGTCAGGGTGGAGCTAATGCTGGGCACACCATTTACAATGCGGAAGGGAAAAAGTTTGCACTTCATCTTGTTCCTTCTGGTATCCTCAATGAAGATACTCTCTGTGTTATTGGGAATGGGGTTGTGGTGCACCTGCCAGGGCTGTTTAAAGAAATTGATGGCCTTGAGTCAAATGGGGTCTCTTGCAAGGGAAGGATATTGATATCAGATCGTGCTCACCTCTTGTTTGATTTCCACCAAGTAGTGGATGGGCTGAGAGAAGCTGAGCTTGCTAAATCTTTCATTGGCACCACCAAGAGAGGCATTGGACCGTGCTACTCCAGCAAGGTTAACCGTAATGGCATTAGAGTGAGTGATTTGAGGCACATGGATACTTTTCCTCAGAAGCTTGATCTTTTGTTATCAGATGCTGCATCAAGGTTCAAAGATTTTAACTATGGTCCAGAGATGCTCAAGGAAGAAGTTGAAAATTACAAGAGATATGCTGAGAGGTTGGAACCCTTTATTGCTGATACTGTGCATGTCATGAACGATGCTATACAGCAAAAGAAGAAGATTTTGGTTGAAGGAGGACAAGCAACCATGCTGGACATTGATTTTGGAACATATCCCTTTGTTACTTCTTCTAGCCCATCAGCTGGTGGGATATGCACTGGTCTTGGCATCGCTCCAAGAGTAATTGGTGATTTATTAGGAGTGGTTAAAGCATACACTACAAGAGTTGGTTCTGGTCCTTTTCCAACAGAAATTTTGGGTTCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACAACTACTGGCCGTCCTCGACGGTGCGGTTGGCTTGATATAGTTGCATTGAGATACTCCTGTCAGATCAATGGTTTTTCAGCATTGAATCTCACCAAGCTTGATGTTTTATCGGATCTTGATGAAATACAATTGGGGGTCTCTTACAAACATGTTGATGGTACCCCAATCAACTCATTCCCTTCAGATCTCCGTCTTCTTGAGCAATTGAAGGTGGAATATGAAGTACTTCCAGGATGGAAGTCTGATATTTCTTCCATTAGAAACTATTCTGACCTTCCAAAAGCTGCACAGCAATACGTGGAAAGGATAGAAGAACTTGAAGCTGAGACATCAAGCAGTGGAGGGTCTAGAAAGAGGGTCATAGAGGATGAAGAGAAAGATGAATTCAATGTTAATGACTGTCCCATTGAGCAAGTGAGGCTAACAGTTCCAATCACTGATGACCCTACTCAACCAGCTCTAACATTCAGGACATGGGTTCTGGGGTTGGCATCATGTGTGCTCCTTGCTTTTGTGAACCAATTTTTGGGCTACAGAACCAACCCTCTGAAAATCTCTTCTGTCTCAGCTCAGATTATTACCCTCCCACTTGGGAAATTGATGGCTGCAACTCTTCCCACAAAACCAATTCAAGTTCCATTCACAAGCTGGTCTTTTTCCTTGAATCCAGGACCATTCTCTTTGAAGGAACATGTGCTGATTACCATCTTTGCTAGCTCTGGATCTAGTGGTATTTATGCAATTCACATCATCACAATTGTCAAGGCTTTTTATCATAGGACCATCCATCCTGTAGCAGCTTATTTTTTAGCATTATCAACCCAGATGCTTGGGTATGGATGGGCTGGGATTTTCAGAAAGTTCCTTGTTGACTCCCCTTACATGTGGTGGCCTGAAAACCTTGTGCAGGTCTCTCTATTCAGGGCATTTCATGAAAAAGAAAAAAGGCCTAAAGGGGGAAACACTAGACTGCAATTCTTTTTCCTAGTCTTTGTAGCAAGCTTTGCATATTACATTGTTCCAGGCTATTTTTTCCAAGCAATATCAACTATCTCAGTAGCTTGCTTGATTTGGAAAGATTCCATCACAGCACAACAGATTGGTTCAGGCATGAAAGGCTTTGGCATTGGCTCATTTGCTCTTGATTGGAACACAGTTGCTGGCTTCTTAGGCAGTCCTTTGGCTGTGCCTGGCTTTGCCATCATCAACACATTGGCTGGATTTGTGATTTATATGTATGTTGTGATTCCCTTTGCCTATTGGAACAATTTATATGATGCCAAAAAGTTTCCCCTAATTAGTTCTCACACATTTGACTCTACTGGTGCACAATATAATGTTTCTAGGATCCTAAACACCAAAACTTTTGACATTGATTTGGATAGTTATAACAACTACAGCAAGATCTATCTTAGTATCACATTTGCATTCCAGTATGGATTGAGCTTTGCAGCTCTGACAGCCACTATCTCACATGTTGTCCTTTTCCATGGAGATATGATTCTTCAGATGTGGAAGAAGACAACAAGTTCACTAAAAACACAGCTTGGAGATGTGCATACAAGAATTATGAAGAAAAACTATGAACAAGTCCCTGAATGGTGGTTTGTCTCTATTTTAATTCTAATGGTTTTTATGTCCTTGGTAGCTTGTGAAGGCTTTGGCAATCAGCTCCAACTTCCATGGTGGGGAATCTTACTTTCTCTAGCAATTGCATTAGTTTTCACCTTGCCAGTTGGGGTCATTGAAGCAACAACAAATGTGAGAACAGGACTCAATGTGATCACTGAGTTGGTAATTGGGTTCATGTACCCAGGAAAGCCCCTTGCTAATGTAGCCTTCAAGACTTATGGACATATTAGCATGGTACAGGCACTTGGATTTCTTGGTGACTTCAAATTAGGCCACTACATGAAAATTCCTCCAAAATCTATGTTCATTGTGCAGCTGGTAGGCACAGTTGTTTCTTTATCTGTTCACTTTGGCACAGCATGGTGGCTTCTCACATCTATTGAGAACATTTGTGATGAAACATTGTTGCCAAAGGGTAGTCCTTGGACATGCCCTGGTGATGATGTGTTCTATAATGCTTCCATCATATGGGGAGTAGTAGGGCCACAGAGAATGTTCACCAAGGATGGTGTTTATCCTGGGATGAATTGGTTTTTCCTCATTGGTCTACTTGCACCTGTTCCAGTGTGGTTGCTTTCTCACAAATTCCCCAACCAAAAGTGGATTAAACTCATCAACATTCCCATTATCACTGCAGGTGCATCAAACATCCCACCAGTGAGATCTGTGAATTATATCACTTGGGGAATGGTTGGAATCTTCTTCAATTTCTATGTTTATAGAAAGTTCAAGGCATGGTGGGCTAGACATACTTACATCCTCTCAGCTGCTTTAGATGCTGGAGTTGCTTTTATGGGTTTGATCCTTTATTTTGCTCTCCAATCATATGGTATTTTTGGTCCAACCTGGTGGGGTCTTGAAGCTGATCACTGCCCTTTGGCCAAATGCCCTACAGCTCCAGGTGTACCTGCAAAGGGATGCCCTGTTGCATATTAG 3645 0.4337 MSISSLKFDSHAICNPHRPFTFHHHRTPTRSVVVCSAKPVAPPLSKLTAADSSAARIESLSQVSGVLGCQWGDEGKGKLVDILAQHFEIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILISDRAHLLFDFHQVVDGLREAELAKSFIGTTKRGIGPCYSSKVNRNGIRVSDLRHMDTFPQKLDLLLSDAASRFKDFNYGPEMLKEEVENYKRYAERLEPFIADTVHVMNDAIQQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLLGVVKAYTTRVGSGPFPTEILGSGGDLLRFAGQEFGTTTGRPRRCGWLDIVALRYSCQINGFSALNLTKLDVLSDLDEIQLGVSYKHVDGTPINSFPSDLRLLEQLKVEYEVLPGWKSDISSIRNYSDLPKAAQQYVERIEELEAETSSSGGSRKRVIEDEEKDEFNVNDCPIEQVRLTVPITDDPTQPALTFRTWVLGLASCVLLAFVNQFLGYRTNPLKISSVSAQIITLPLGKLMAATLPTKPIQVPFTSWSFSLNPGPFSLKEHVLITIFASSGSSGIYAIHIITIVKAFYHRTIHPVAAYFLALSTQMLGYGWAGIFRKFLVDSPYMWWPENLVQVSLFRAFHEKEKRPKGGNTRLQFFFLVFVASFAYYIVPGYFFQAISTISVACLIWKDSITAQQIGSGMKGFGIGSFALDWNTVAGFLGSPLAVPGFAIINTLAGFVIYMYVVIPFAYWNNLYDAKKFPLISSHTFDSTGAQYNVSRILNTKTFDIDLDSYNNYSKIYLSITFAFQYGLSFAALTATISHVVLFHGDMILQMWKKTTSSLKTQLGDVHTRIMKKNYEQVPEWWFVSILILMVFMSLVACEGFGNQLQLPWWGILLSLAIALVFTLPVGVIEATTNVRTGLNVITELVIGFMYPGKPLANVAFKTYGHISMVQALGFLGDFKLGHYMKIPPKSMFIVQLVGTVVSLSVHFGTAWWLLTSIENICDETLLPKGSPWTCPGDDVFYNASIIWGVVGPQRMFTKDGVYPGMNWFFLIGLLAPVPVWLLSHKFPNQKWIKLINIPIITAGASNIPPVRSVNYITWGMVGIFFNFYVYRKFKAWWARHTYILSAALDAGVAFMGLILYFALQSYGIFGPTWWGLEADHCPLAKCPTAPGVPAKGCPVAY. 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04073 1214 NCBIfam adenylosuccinate synthase 66 465 IPR001114 GO:0000166|GO:0004019|GO:0006164
Seca2g04073 1214 Gene3D Adenylosuccinate Synthetase, subunit A, domain 2 162 260 IPR042110 -
Seca2g04073 1214 CDD AdSS 62 394 IPR001114 GO:0000166|GO:0004019|GO:0006164
Seca2g04073 1214 NCBIfam small oligopeptide transporter, OPT family 491 1177 IPR004648 GO:0055085
Seca2g04073 1214 ProSitePatterns Adenylosuccinate synthetase GTP-binding site. 70 77 IPR018220 GO:0005525
Seca2g04073 1214 FunFam Adenylosuccinate synthetase 326 484 - -
Seca2g04073 1214 Gene3D Adenylosuccinate Synthetase, subunit A, domain 1 66 325 IPR042109 -
Seca2g04073 1214 Gene3D Adenylosuccinate Synthetase, subunit A, domain 3 326 484 IPR042111 -
Seca2g04073 1214 PANTHER ISP4 LIKE PROTEIN 485 1212 IPR004648 GO:0055085
Seca2g04073 1214 ProSitePatterns Adenylosuccinate synthetase active site. 193 204 IPR033128 -
Seca2g04073 1214 Hamap Adenylosuccinate synthetase [purA]. 1 515 IPR001114 GO:0000166|GO:0004019|GO:0006164
Seca2g04073 1214 Pfam Adenylosuccinate synthetase 66 465 IPR001114 GO:0000166|GO:0004019|GO:0006164
Seca2g04073 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 465 IPR027417 -
Seca2g04073 1214 NCBIfam OPT family oligopeptide transporter 497 1177 IPR004813 GO:0035673
Seca2g04073 1214 Coils Coil 448 468 - -
Seca2g04073 1214 Pfam OPT oligopeptide transporter protein 513 1175 IPR004813 GO:0035673
Seca2g04073 1214 FunFam Adenylosuccinate synthetase, chloroplastic 162 260 - -
Seca2g04073 1214 SMART adenylsucc_synt 63 481 IPR001114 GO:0000166|GO:0004019|GO:0006164
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04073 Seca-Chr2 123199065 123208647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04073 491 1212 Organic Solute Cotransporters AT4G26590 67.497 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04073 - - gmx:100820498 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04073 2 123199065 123208647 Seca2g04073 2 123199065 123208647 ECH