Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04012 ATGACTGACAATGGAGTTGGACCTGATCTTGTCACCCACAATATTATGTTATCTGCATTTAAAAGTGGGGCGCAGTATTCAAAAGCTCTATCATATTTTGAACTAATAAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATTGTTATCCACTGTCTAGTGAAGCTTCAACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGTGACCCTGATGTTGTAACATTCACTAGTATCATTCACATGTATTCTACGTGTGGGCAGGTTGACAATTGTGAGGCTGTGTTCAATATGATGCTTGCCGAAGGGCTGAAACCAAATATAGTCTCATATAATGCATTGATAGGTGCATATGCTGCTTGTGGGATGGAAAATGAGGCACTTCAGGTTTTTAATGAGATAAAACAAAATGGTTTCCGCCCAGATATTGTATCTTATACATCTCTGCTTAATGCCTATGGAAGATCACAAAAGCCCCAAAAAGCAAGGGAAGTATTCAAAATGATAAAGAGAAACAACTTGAAGCCAAACATTGTCAGTTACAATGCACTGATTGATGCCTATGGATCTAATGGTATGCTGGAGGATGCAATTGGAATCTTACGGGAAATGGAACGTGATGGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCATGTGGACGGTGCAGTCAGAAGGTGAAAATTGATACTGTACTATCAGCAGCTGAGATGCGAGGCATTAAGTTGAACACAATTGCATATAATTCAGCTATAGGAAGCTATATTAATGTGGGGGAATATGACAAAGCTATTGGCTTGTATAACTCTATGAGGAAGAAAAAAATAAGAGCCGATGCTGTTACTTACACTGTCTTGATAAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTCATGGAAGAAATGATGCATCTAAAACTTCCTATGTCCAAAGAGGTCTACTCATCTGTCATATGCGCCTATAGCAAACAGGGACAAATCATAGAAGCAGAATCTACATTCAACTTGATGAAATCATCTGGTTGCAATCCAGATGTGATTACATATACTGCCATGCTTGACGCTTACAATGCAACTGAGAATTGGGAGAAATCATATGCACTCTTTGAAGAAATGGAAGCAAATGACATCAGGCTAGATACTATTGCATGTGCAGCTCTGATGAGAGCTTTTAATAAAGGTGGCCAACCAGGAAAGGTCCTTAGTCTTGCAGAAACTATGAGAGAAAAAGAGATTCCTTTAAGTGATACCATATTTTTTGAAATGGTGTCTGCCTGTAGCTTATTACATGATTGGAAAACAGCTGTTGATATTATCAAGTACATAGAACCCTCACTTCCTGTAATTTCATCTGGATGTTTGAATCTGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGCTGGCATCAGGTGCCGATGTTAACTTCAATACTTATTCTATTTTATTGAAGAACCTTTTATCCACTGGAAATTGGAGGAAATATTTAGAGGTACTGCAATGGATGGAAGATGCAGGAATTCATCTATCACACAAAATGTACGATGATTTATCCTCCTTTTCACAAAAATGCTGTGGAGCTGAAAATGCCGCTGTCATAAGAGAAAGACTTGAATCCTTGAAAAGAAAATCCGGGGATCAAGTTTCTGCAAGCCAACCATGTGAATCTCCTGTTCTTAGTTGA 1761 0.3793 MTDNGVGPDLVTHNIMLSAFKSGAQYSKALSYFELIKGTHIRPDTTTLNIVIHCLVKLQQYDKAIDIFNSMREKKSECDPDVVTFTSIIHMYSTCGQVDNCEAVFNMMLAEGLKPNIVSYNALIGAYAACGMENEALQVFNEIKQNGFRPDIVSYTSLLNAYGRSQKPQKAREVFKMIKRNNLKPNIVSYNALIDAYGSNGMLEDAIGILREMERDGIQPNVVSICTLLAACGRCSQKVKIDTVLSAAEMRGIKLNTIAYNSAIGSYINVGEYDKAIGLYNSMRKKKIRADAVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPMSKEVYSSVICAYSKQGQIIEAESTFNLMKSSGCNPDVITYTAMLDAYNATENWEKSYALFEEMEANDIRLDTIACAALMRAFNKGGQPGKVLSLAETMREKEIPLSDTIFFEMVSACSLLHDWKTAVDIIKYIEPSLPVISSGCLNLFLHSLGKSGKIETMLKLFFKMLASGADVNFNTYSILLKNLLSTGNWRKYLEVLQWMEDAGIHLSHKMYDDLSSFSQKCCGAENAAVIRERLESLKRKSGDQVSASQPCESPVLS. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04012 586 Pfam Pentatricopeptide repeat domain 139 200 IPR002885 -
Seca2g04012 586 Pfam Pentatricopeptide repeat domain 209 240 IPR002885 -
Seca2g04012 586 Pfam Pentatricopeptide repeat domain 384 428 IPR002885 -
Seca2g04012 586 Pfam Pentatricopeptide repeat domain 79 127 IPR002885 -
Seca2g04012 586 Gene3D Tetratricopeptide repeat domain 322 395 IPR011990 GO:0005515
Seca2g04012 586 Gene3D Tetratricopeptide repeat domain 144 214 IPR011990 GO:0005515
Seca2g04012 586 Gene3D Tetratricopeptide repeat domain 215 321 IPR011990 GO:0005515
Seca2g04012 586 SUPERFAMILY TPR-like 44 388 IPR011990 GO:0005515
Seca2g04012 586 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 161 455 - -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Seca2g04012 586 Pfam PPR repeat family 329 372 IPR002885 -
Seca2g04012 586 Pfam PPR repeat family 256 304 IPR002885 -
Seca2g04012 586 Pfam PPR repeat 471 497 IPR002885 -
Seca2g04012 586 Pfam PPR repeat 47 74 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 188 222 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 293 323 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 47 79 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 83 117 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 363 396 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 153 187 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 259 291 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 118 152 IPR002885 -
Seca2g04012 586 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Seca2g04012 586 FunFam Pentatricopeptide repeat-containing protein isoform A 216 322 - -
Seca2g04012 586 FunFam Os07g0213300 protein 21 135 - -
Seca2g04012 586 FunFam Pentatricopeptide repeat-containing protein At2g41720 409 586 - -
Seca2g04012 586 Gene3D Tetratricopeptide repeat domain 404 581 IPR011990 GO:0005515
Seca2g04012 586 Gene3D Tetratricopeptide repeat domain 1 143 IPR011990 GO:0005515
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Seca2g04012 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04012 Seca-Chr2 122298312 122306192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04012 81 549 Glycosyltransferase AT1G05670 23.241 9.45e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04012 - - gmx:100814643 1040.41