Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03950 ATGGTGTCAAAACTTGTTGGTTTCTATGAACATGGGAGTTTTTCATTTATCAAAATCTTCATACTTGTACTCCTTAATTTTATACTTCACAAAGCTGACTCAGGCTGCAACAACTCTGTTGTCACTTCATTAGTTCCATTTTCACCCTATGAGATTCTCTCATCACTCCAAGCACTGCCTCTTGATGGCTACTTGAGTTTAAGTGACAATGGTGATGCTGCCAAGGACTTTGGCAACATACATCATTTCCCTCCCCTAGCAGTGCTTCATCCAAAAACTGTTTCTGATATCTCACTCACCATGAGGCATATATTTGAAATGGGCTCTGCTTCAGAGTTTAAGGTAGCTGCTAGAGGCCATGGCCATTCCCTTCAAGGTCAGGCACAAGCACATGGAGGCCTAGTCATTAACATGGAGTCATTACAAAGTCCTGAAATGAAAGTTCACATTGGTGAATTTCCTTATGTGGATGTCTCAGGGGGTGAGTTGTGGATAAACATTCTGCATGAAACTCTTAAACTTGGGTTGGCACCTAAATCTTGGACAGATTACCTTCATCTAACTGTTGGGGGTACTCTTTCAAATGCTGGAATAAGTGGTCAAGCCTTTAGGCATGGACCCCAGATCAATAACATCTTCCAGTTGGAAGTGGTCACAGGAAAAGGAGAGGTTGTCACATGCTCAGCAAACAGAAATGCTGATCTTTTTTATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATTACCAAGGCCAGAATTTCTCTTGAACAAGCACCAAAGAAGGTTAAATGGATTAGGGTGCTATACTCAGAATTCTCTTTATTTACCAGGGATCAAGAGTATTTGATATCACTTAAAAACACATTTGATTATATTGAAGGGTTTGTGATCATAAATAAAACTGGCATCCTTAACAATTGGAGATCATCTTTTGACCCCAAAGACCCACTTCAAGCTAGTCAATTCAATTCAGATGGAAGGACTTTCTACTGTCTTGAGATGGCAAAATACTTCAACCCAGATGAAGCTGAAGTCATGAATCAGAGTGTTGATCACCTACTGTCACAACTGAGTTATATTCCACCCACACTCTTCCTATCAGAAGTTTCTTACGTGGAATTCCTAGACAGAGTGCATGTTTCAGAGAAAAAGCTAAGAGCAAAAGGCTTATGGGAAGTTCCCCATCCTTGGCTGAACCTTCTTGTCCCAAGTAGTAAGATTCATGACTTTGCTGAAGAGGTATTTGGAAATATTCTTAAGGACACAAGCAATGGTCCCATACTAATTTACCCTGTCAACCAAACAAGGTGGAATAGTAAAACATCTTTGGTTACCCCAAAGGAAGATGTTTTCTACCTTGTGGCATTCCTATCATCTGCAGTGCCATCTTCAACTACAGGTACAAACAGTTTAGAATACATTCTAAGCCAAAACAAAAGGATCATAGATTTCTGCACAGATGGCCAACAAAGTGTGAAGCAATATCTTCCCCATTACAGCACACAGGAAGAATGGCAAGCCCACTTTGGGTCAAGATGGGAAACATTCATGGCAAGAAAAACAACATATGACCCACTGGCACTGCTTGCCCCTGGCCATAGAATCTTTCAAAAGGCAATCTCTACCTCTTGTTAG 1638 0.409 MVSKLVGFYEHGSFSFIKIFILVLLNFILHKADSGCNNSVVTSLVPFSPYEILSSLQALPLDGYLSLSDNGDAAKDFGNIHHFPPLAVLHPKTVSDISLTMRHIFEMGSASEFKVAARGHGHSLQGQAQAHGGLVINMESLQSPEMKVHIGEFPYVDVSGGELWINILHETLKLGLAPKSWTDYLHLTVGGTLSNAGISGQAFRHGPQINNIFQLEVVTGKGEVVTCSANRNADLFYGVLGGLGQFGIITKARISLEQAPKKVKWIRVLYSEFSLFTRDQEYLISLKNTFDYIEGFVIINKTGILNNWRSSFDPKDPLQASQFNSDGRTFYCLEMAKYFNPDEAEVMNQSVDHLLSQLSYIPPTLFLSEVSYVEFLDRVHVSEKKLRAKGLWEVPHPWLNLLVPSSKIHDFAEEVFGNILKDTSNGPILIYPVNQTRWNSKTSLVTPKEDVFYLVAFLSSAVPSSTTGTNSLEYILSQNKRIIDFCTDGQQSVKQYLPHYSTQEEWQAHFGSRWETFMARKTTYDPLALLAPGHRIFQKAISTSC. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03950 545 Gene3D - 71 537 IPR016167 -
Seca2g03950 545 Gene3D - 262 496 IPR016170 -
Seca2g03950 545 SUPERFAMILY FAD-binding/transporter-associated domain-like 72 256 IPR036318 GO:0050660
Seca2g03950 545 ProSiteProfiles PCMH-type FAD-binding domain profile. 81 259 IPR016166 GO:0071949
Seca2g03950 545 Pfam FAD binding domain 85 228 IPR006094 GO:0050660
Seca2g03950 545 Gene3D - 138 261 IPR016169 -
Seca2g03950 545 FunFam Cytokinin dehydrogenase 2 262 496 - -
Seca2g03950 545 PANTHER GULONOLACTONE OXIDASE 50 538 - -
Seca2g03950 545 SUPERFAMILY FAD-linked oxidases, C-terminal domain 260 537 IPR016164 GO:0003824|GO:0050660
Seca2g03950 545 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 260 537 IPR015345 GO:0009690|GO:0019139|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03950 Seca-Chr2 121070220 121072724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03950 K00279 - gmx:100808738 940.258