Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03942 ATGTCATTTTTAACTCGTCTCCATGTCTACGCAAGGCCTTTACTCTCCTCTTCTCTCCTCTGCCCCTTGCGCCAGAATGGAATTAGAGAAATAGTGACCAGGATTGGCCTGAATGCGTGCTCGCTTTCTTCTGCAGTTTCAGCTGAAGCTTCAGAATTAGAATGTGATGTGATCCATGATGATGTCAAAGCAGCAGAGAAAGATAATGCACTTTGTTTGGCTGTCTCACAGCTTGCTAGCGAGTTTAGCAAGGAGTCAATGTTATCTTTGCAGAAGTTTTTTAGTGTACGCCGTGCTCATGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCTCTTGGAATTGGAGGATTACCAAAGGGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGTAAGACAACACTTGCACTTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTTTCACTTGTGGAATCAATAGGTGTAAATACTGAAAACCTTCTTATCTCTCATCCTGACTGTGCTGAAAATTTGTTGAGCATGGTTGATACATTAACGAAGAGTGGAGCTGTAGATGTGATTGTGGTTGATAGTTATAAGATGATTTTGTCATTCCAGGTTGCTGCCCTTGTCCCCAAATGCGAACTTGATCAATTAGGAGTTAGTACGAAACAAGATCTACATTCGCGAATGATGACTCAAGCACTACGGAAAATTCATTATTCATTATCGCACTCCCAAACTCTTATTATATTCATTAATCAGGTTAGATTTAGTCCAAAAGCAGTTGGCAGATGTGGATCTATGGAAGAGGTTACTTGTGGTGGAAACGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAATGGGTTTGATCAAAACTGAGGATAAGGTAGAGGGTATTATGATTCGTGTGCAAGTGGTAAAAAACAAACTAGCACCAGCAGCAATGAAAAAGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAATCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCATTATGAAGGATGAGGGAAACTACTTTATTGAAGGTGAGACTTTTACTAGTAGAGAAGCAGCTGAACTGTATTTGGCTGAAAATGAAGGGGTTTGTGACAAGTTAGTTATGGACATGAGAAGATTTTATTTTTAA 1206 0.3997 MSFLTRLHVYARPLLSSSLLCPLRQNGIREIVTRIGLNACSLSSAVSAEASELECDVIHDDVKAAEKDNALCLAVSQLASEFSKESMLSLQKFFSVRRAHVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLVESIGVNTENLLISHPDCAENLLSMVDTLTKSGAVDVIVVDSYKMILSFQVAALVPKCELDQLGVSTKQDLHSRMMTQALRKIHYSLSHSQTLIIFINQVRFSPKAVGRCGSMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGIMIRVQVVKNKLAPAAMKKAELGIKFGRGFCHESDVLDLACEHGIIMKDEGNYFIEGETFTSREAAELYLAENEGVCDKLVMDMRRFYF. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03942 401 ProSiteProfiles RecA family profile 2. 264 347 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Seca2g03942 401 Pfam recA bacterial DNA recombination protein 70 342 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 ProSitePatterns recA signature. 287 295 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Seca2g03942 401 Gene3D - 97 398 IPR027417 -
Seca2g03942 401 PANTHER RECA 50 398 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 330 IPR027417 -
Seca2g03942 401 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 PRINTS RecA protein signature 318 347 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 PRINTS RecA protein signature 284 312 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 PRINTS RecA protein signature 371 388 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 CDD RecA 101 344 IPR013765 GO:0003697|GO:0005524|GO:0006281
Seca2g03942 401 ProSiteProfiles RecA family profile 1. 98 265 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03942 Seca-Chr2 120819037 120825963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03942 - - gmx:100777423 619.772