Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03881 ATGGTGACTAGCATGGAATCGAAAACGTTTCTATATAAATTTGTTTACACTGAGTTGAATAGAAGAAAGTTGGAACTGAACGCAGTCACAGTCACAGAGGCTGAAGAGAAGGAGAGAGAGATGGAAGAGAATGGACAGGAGAGAGAGAGGGAGAATGGGAGAGCGAGAGAGGATGAAGAGGAAAAGTGTTTGAGTATGAAGGTGGATGATGGGAGTGTAGAGAGTCACAGATACTACTTGTCTCGTAGAACCACTCTTGAGATGCTTAGAGACAGAGGCTACTCCATTCCTTCTCCTGAAATCCAACTCTCTCTCTCTGAATTTCGTGAAATTCACGGCCACTCTCCTGACGTTGACCGCCTCCGTTTCTCAGCCACTCACACCTCTGACCCTTCCAAAAGGGTTTTAGTGATTTTCTCTGGGCCAGGTGTTGTCAAGGTTAATGTCATTCGCAACATTGCAGGGCAGATTGTCAATAGAGACACTTTGACTGGGCTTATTTTGATTGTGCAAAACCAAATTACTAGCCAGGCCATGAAAGCTGTAAAACTTTTCTCTTTCAAGGTTGAAATATTCCAGATCACAGACTTGCTTGTTAATATTACTAAGCATGTTTTGAAGCCAAAGCATCAGGTGCTGACTGATAAGCAGAAAAAGAATCTGCTGAAGCAGCACAATATAGAAGAAAAACAGTTGTTTTGTTCTCAGCTTCCCCGTATGCTACTGACAGATGCAATTGCACAATATTATGGACTTGAGAAGGGGCAGGTAGTTAAAGTTATCTACAGTGGTGGTGAAATCACCCAGATGCATGTCACATATCGATGTGTTTGGTGA 837 0.4277 MVTSMESKTFLYKFVYTELNRRKLELNAVTVTEAEEKEREMEENGQERERENGRAREDEEEKCLSMKVDDGSVESHRYYLSRRTTLEMLRDRGYSIPSPEIQLSLSEFREIHGHSPDVDRLRFSATHTSDPSKRVLVIFSGPGVVKVNVIRNIAGQIVNRDTLTGLILIVQNQITSQAMKAVKLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKQHNIEEKQLFCSQLPRMLLTDAIAQYYGLEKGQVVKVIYSGGEITQMHVTYRCVW. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03881 278 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 72 200 IPR036710 GO:0003677|GO:0003899|GO:0006351
Seca2g03881 278 MobiDBLite consensus disorder prediction 34 63 - -
Seca2g03881 278 SUPERFAMILY RPB5-like RNA polymerase subunit 197 278 IPR035913 -
Seca2g03881 278 Pfam RNA polymerase Rpb5, C-terminal domain 199 277 IPR000783 GO:0003677|GO:0003899|GO:0006351
Seca2g03881 278 Pfam RNA polymerase Rpb5, N-terminal domain 74 156 IPR005571 GO:0003677|GO:0003899|GO:0006351
Seca2g03881 278 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 72 278 IPR014381 GO:0003899
Seca2g03881 278 Gene3D - 197 278 IPR035913 -
Seca2g03881 278 Coils Coil 31 54 - -
Seca2g03881 278 Gene3D - 68 196 IPR036710 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03881 Seca-Chr2 119630351 119633869 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03881 K03013 - gmx:100306033 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03881 2 119630351 119633869 Seca2g03881 2 119630351 119633869 ECH