Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03874 ATGATAACTATGGATACTTTGCTCAAAACACCAAACAAGCTTGAATTTTTGCACCCACTGCACGGTTATTCAGAAAAATTGAACAATTCAAGCTCCTCTAAGTTGCAAAACCAGGAGCTTAGATTTGGTTCAAAGAAACCACTGGTGAAGTGGGGTAAGTGTGTTGGTGGTTTGAGGGCTAGTAGCAGTGCCCTTCTGGAACTTGTTCCAGAATTTAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCATCAAAGGGAGCTGTGGTGGACCTTGCAGTTGTGGGAGGAGGCCCTGCAGGACTTGCAGTTGCACAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCCATTGACCCAAACCCCAGATTAATTTGGCCTAATAATTATGGTGTTTGGGTGGATGAATTTGAAGCCATGGATTTACTTGATTGCCTTGACACAACTTGGTCTGGTGCTGTTGTATTCATTGATGATAAAACAAAAAAGTATCTAGATAGACCCTATGGTAGGGTCAATAGGAAGCTGCTGAAGTCAAAGATGCTACAAAAATGCATATCAAATGGTGTCAAGTTTCACCAAGCTAAAGTCATCAAGGTTATTCATGAGGAATCCAAATCTATGCTGATTTGTAATGATGGTGTCACTGTTCAGGCTACTGTGGTCCTTGATGCCACTGGCTTTTCAAGATGCCTTGTTCAGTATGATAAACCATATAATCCAGGTTACCAAGTTGCTTATGGGATTTTGGCTGAGGTTGAAGAACACCCCTTTGATGTTGATAAAATGCTTTTTATGGATTGGAGAGATTCTCATCTGGACAATGACATGGTGCTGAAGGAGAGAAATAGCAGAATACCCACCTTTCTATATGCAATGCCCTTTTCATCTACCAAGATATTTCTTGAAGAAACTTCTCTTGTTGCACGCCCCGGGTTACGGATGGATGATATACAAGAAAGAATGGTTGCTAGGTTGAAACACTTGGGAATTAAAGTGAAAAGCATTGAAGAAGATGAGCACTGTGTCATTCCCATGGGTGGCCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGCATTGGTGGCACAGCTGGGATGGTGCATCCTTCAACTGGGTATATGGTAGCAAGGACCTTAGCTGCAGCTCCTATTGTTGCTAATTCTATTGTTCAGTATCTTGGTTCTGATAGAGGTCTTTCAGGAGGTGAAATATCTGCACAAGTGTGGAAAGATTTATGGCCCATCCAAAGGAGGAGACAAAGGGAGTTCTTCTGTTTTGGTATGGATATCTTACTCAAGCTTGATTTACCTGGCACAAGGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTATTGGCATGGATTCTTATCATCAAGACTGTTTCTTCCTGAGCTCATAACTTTTGGACTGTCTCTATTTTCTTATGCTTCTAATACATCTAGGGTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAATATGATCAACAACTTGATAAAAGATACAGAATAA 1527 0.4132 MITMDTLLKTPNKLEFLHPLHGYSEKLNNSSSSKLQNQELRFGSKKPLVKWGKCVGGLRASSSALLELVPEFKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDKTKKYLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEESKSMLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVEEHPFDVDKMLFMDWRDSHLDNDMVLKERNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMVARLKHLGIKVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQYLGSDRGLSGGEISAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELITFGLSLFSYASNTSRVEIMAKGTLPLVNMINNLIKDTE. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03874 508 NCBIfam lycopene cyclase family protein 93 488 IPR010108 GO:0016117|GO:0016705
Seca2g03874 508 SUPERFAMILY FAD/NAD(P)-binding domain 92 475 IPR036188 -
Seca2g03874 508 Pfam Lycopene cyclase protein 93 485 - -
Seca2g03874 508 FunFam lycopene epsilon cyclase, chloroplastic 89 427 - -
Seca2g03874 508 PANTHER - 54 503 - -
Seca2g03874 508 Gene3D - 90 437 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03874 Seca-Chr2 119518505 119520917 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03874 K06443 - gmx:100810895 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03874 2 119518505 119520917 Seca2g03874 2 119518505 119520917 ECH