Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03864 ATGGCGTTACACTCTGTTTCCTCCGTTTCTCAAGTGCTACGCCTCTCCGAGCCATTCCCTTCGATCCTCAACGGCAACGCTCACTTACTCGTCGACTTCGCCCCTCTCCGCCGTAAACCGAAGCGGCGTAACCATAGATTGACGCCGTTTCTCTCTCCCGCACCTCTCCGTCATTCCTCCGTCAAAGCCGCTCTCCACCTTAACCGCTCCAACGACCACCGCCATTCACCTCCTTCCTCTTCTTCTGCAGAATCCAAACCACAGGTTGCAAACTTGGAGGACATAATATCAGAAAGAGGAGCCTGTGGTGTTGGATTCATTGCTAATTTAGAAAACAAGGCTTCATATGAGATCGTCAAGGATGCTTTAAATGCTTTAAGCTGTATGGAACATCGTGGTGGTTGTGGAGCAGACAATGACTCTGGTGATGGTTCTGGGTTGATGACTGCTGTTCCATGGGATCTATTTGACAATTGGGCTAACAAGCAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGTGTGGGAATGGTTTTCCTACCCAAAGATGTGGAGCTTCTGAATGAGGCCAAGAAGGTTATTGTAAATACTTTTCGGCAAGAAGGTCTTGAGGTGCTTGGATGGAGACCTGTCCCTGTAAATACTTCTGTTGTAGGTTATTATGCAAAGGAGACCATGCCCAATATACAGCAGGTATTTGTTAAGATCGTGAAAGAAGAAAATGTTGATGACATTGAACGAGAACTGTACATCTGTCGTAAATTGATTGAAAAAGCAGTAAGCTCAGAAAGTTGGGGAAATGAGCTTTATTTCTGTTCTTTATCCAATCAAACAATAGTTTACAAAGGGATGCTTCGGTCACAAGTTCTTGGGTTATTTTATTCTGACCTTCAAAATGATCTTTATAAATCCCCCTTTGCCATTTATCATCGAAGGTATAGCACAAATACTACTCCCAGATGGCCTCTTGCACAACCAATGAGGCTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGGAACTTGAATTGGATGCAATCACGGGAGCCGTCATTGAAGTCACCTGTATGGCGAGGTCGTGAAAATGAAATTGGTCCATTTGGAAATTCAAAGGCATCAGACTCAGCAAATCTTGACAGTGCTGCAGAATTATTAATAAGAAGTGGTCGCAGTCCTGAGGAAGCTATGATGATTCTTGTCCCAGAGGCATACAAAAATCATCCAACTCTGACAATCAAATACCCTGAGGCGGTTGACTTCTATGACTACTACAAGGGTCAGATGGAAGCTTGGGATGGACCTGCCTTGCTTTTATTCAGTGATGGAAAAACCGTTGGTGCATGTCTTGATCGGAATGGACTTCGACCCGCTAGGTTTTGGCAAACATCAGACAATATGGTCTACGTTGCCTCTGAGGTTGGTGTTGTACCAGTGGATGAGTCAAAGGTTATCTCAAAAGGCCGATTAGGTCCAGGCATGATGATAACAGTTGATTTACTTGGTGGTCAGGTCTATGAGAATACAGAGGTTAAAAAACGAGTAGCTTTATCAAACCCGTATGGGAACTGGATCAAGGAAAATCTGCGGTCTTTGAAGCCTGGGAACTTCCTTTCAGCCTCTGTGATGGACAATGATGCAGTATTAAGACAACAACAGGCATTTGGGTACTCCAGTGAAGATGTCCAGATGGTGATTGAGAGTATGGCTGCTCAAGGAAAGGAGCCAACTTTTTGCATGGGAGATGATATTCCTTTGGCAGCATTGTCTCAGAAACCTCACATGCTTTTTGATTATTTTAAGCAACGGTTTGCACAGGTTACAAATCCTGCAATTGATCCTCTTCGAGAAGGATTGGTTATGTCTCTTGAAGTGAATATAGGGAAGAGAGTTAATATATTGGAAGTTGGACCAGAGAATGCATCACAGGTATTCTTGCATATATCTGTAATATTTGGTTTGTCATCGGGAAATAATGTCTATGATTTTGATGCCTTTTCTTATCCAGAAGATGATGGTATGTTTTTGGAGCAGGTTATATTATCCAGTCCGGTATTGAATGAAGGGGAACTTGAGTCATTACTAAAAGACTCCCTCTTAAAACCACAAGTATTACCCACATTTTTTGATATAACTAAGGGGATTGATGGTTCCTTGGAGAAAGCACTAAATAAACTTTGTGAAGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGCTGCTTATTCTTTCAGACCGTTCAGAAGCACTGGAACCAACTCATCCTTCAATTCCAATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATCCAGAATGGCCTGCGGATGTCAGCTTCAATTATAGCAGATACTGCCCAGTGCTTTAGCACCCATCAGTTCGCCTGTTTAGTAGGATATGGTGCAAGTGCCGTGTGTCCATACTTGGCATTGGAGACATGCCGGCAATGGCGTTTGAGTAGTAAAACTGTAAATCTTATGAGGAATGGAAAGATGCCTACTGTATCAATTGAACAGGCACAGAAGAACTACTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCCCAGATATTTGAAGTCTATGGATTAGGGAAGGAAGTTGTGGATCTTGCATTCAGAGGAAGTGTGTCAAAAATTGGTGGATTAACTTTTGATGAGCTAGCAAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCAAAAAGATTGGAAAATTATGGATTTATACAGTTCAGACCAGGAGGTGAGTACCATGCAAATAATCCGGAGATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGTCAAAGTGCCTTTGCAGTTTATCAGCAACATTTGGCTAATCGACCTGTTAATGTTCTTCGTGATCATCTTGAGTTCAAAAGCGAACGTGCTCCAATACCTGTGGGGAAGGTTGAACCTGCTTCATCTATTGTGCAACGGTTTTGCACTGGGGGTATGTCACTTGGAGCTATTTCAAGAGAAACTCATGAAGCAATTGCAATTGCAATGAACAGATTAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGACCCTATTCGCTGGAAACCACTTACAGATGTCGTTGATGGTTACTCTCCAACTCTTCCACATCTTAAAGGTCTTCAAAATGGGGATACTGCTACTAGTGCCATCAAGCAGGTTGCTTCAGGAAGGTTTGGTGTCACCCCAACATTCTTGGCAAATGCTGATCAATTAGAAATCAAAATTGCACAAGGTGCAAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCAAGGTTGAGAAATTCAAAACCAGGGGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTATTCTATTGAGGATCTTGCTCAATTGATCTTCGATCTTCATCAGGTGAACCCTAAAGCCAAGGTGTCAGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCGAAGGGCAATGCTGATATTATACAGATTTCAGGACATGATGGGGGAACAGGAGCAAGCCCTATAAGTTCCATCAAACATGCAGGAGGTCCTTGGGAACTTGGACTTACAGAAACTAACCAGACACTTATTGAAAATGGACTTAGAGAAAGGGTCATTCTCAGAGTTGATGGTGGATTCAGAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGCGCTGATGAATATGGGTTTGGTTCAGTGGCAATGATTGCTACTGGATGTGTTATGGCCCGCATTTGCCACACCAATAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGTGCACGATTTCCAGGTGTTCCTGGTGATCTTGTCAACTACTTTTTATATGTAGCTGAGGAGGTAAGAGGCATATTGGCACAGCTGGGGTATGAGAAGTTAGATGATATAATCGGCCGGACAGACTTATTGCAACCAAGAGACATATCCCTAGTGAAAACTCAGCATCTAGACCTAAGTTATATACTTTCAAATGTTGGATTACCTAAATGGAGCAGTACAGAAATCAGGAATCAGGAGCCTCACAACAATGGTCCTGTTCTGGATGATGTTTTGCTAGCAGACCCAGAGATTGCAGATGCCATTGAAAATGAAAAGGTGGTTAGTAAGACCATAAAAATATACAACATTGATCGTGCTGCTTGTGGGCGTATAGCTGGTGTCATTGCAAAGAAGTACGGTGACACTGGTTTTGCTGGACAGTTGAATATAACATTTACAGGAAGTGCTGGGCAGTCATTTGGGTGCTTTCTGACACCTGGAATGAACATTCGCCTTGTTGGAGAAGCTAATGATTATGTTGGGAAGGGTATGGCTGGAGGTGAGTTGGCTGTCATTCCAGTTGACAATATAGGGTTTCAACCTGAGGATGCAACTATAGTGGGGAACACTTGCTTGTATGGAGCAACAGGTGGACAAGTCTTTGTCAGAGGGAAAGCAGGGGAAAGATTTGCTGTCAGAAACTCACTTGCTGAAGCTGTGGTTGAAGGCACAGGAGATCATTGTTGTGAGTACATGACTGGTGGCTGCGTGGTTATCTTGGGAAAAGTGGGTAGAAATGTAGCTGCTGGAATGACAGGAGGGTTGGCTTACATTCTTGATGAAGACAATACTCTCATTCCCAAGGTAAACAGAGAAATTGTAAGAATTCAACGAGTATCAGCACCTGTGGGGCAGATGAAGCTGAAGAGCCTAATTGAAGCCCATGTTGAAAAAACCGGTAGTAACAAAGGTGCGGCTATTCTGAAGGACTGGGATAAGTATTTATCACTATTCTGGCAGCTGGTTCCTCCTAGTGAAGAAGACACCCCTGAGGCTAACGCCAAGTTTGGCACAACTGCTACGGAGCAGGTTACTTTGCAGTCTGCTTAG 4962 0.4343 MALHSVSSVSQVLRLSEPFPSILNGNAHLLVDFAPLRRKPKRRNHRLTPFLSPAPLRHSSVKAALHLNRSNDHRHSPPSSSSAESKPQVANLEDIISERGACGVGFIANLENKASYEIVKDALNALSCMEHRGGCGADNDSGDGSGLMTAVPWDLFDNWANKQGIASFDKLHTGVGMVFLPKDVELLNEAKKVIVNTFRQEGLEVLGWRPVPVNTSVVGYYAKETMPNIQQVFVKIVKEENVDDIERELYICRKLIEKAVSSESWGNELYFCSLSNQTIVYKGMLRSQVLGLFYSDLQNDLYKSPFAIYHRRYSTNTTPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIGPFGNSKASDSANLDSAAELLIRSGRSPEEAMMILVPEAYKNHPTLTIKYPEAVDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARFWQTSDNMVYVASEVGVVPVDESKVISKGRLGPGMMITVDLLGGQVYENTEVKKRVALSNPYGNWIKENLRSLKPGNFLSASVMDNDAVLRQQQAFGYSSEDVQMVIESMAAQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRVNILEVGPENASQVFLHISVIFGLSSGNNVYDFDAFSYPEDDGMFLEQVILSSPVLNEGELESLLKDSLLKPQVLPTFFDITKGIDGSLEKALNKLCEAADEAVRNGSQLLILSDRSEALEPTHPSIPILLAVGTVHQHLIQNGLRMSASIIADTAQCFSTHQFACLVGYGASAVCPYLALETCRQWRLSSKTVNLMRNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEVYGLGKEVVDLAFRGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENYGFIQFRPGGEYHANNPEMSKLLHKAVRQKSQSAFAVYQQHLANRPVNVLRDHLEFKSERAPIPVGKVEPASSIVQRFCTGGMSLGAISRETHEAIAIAMNRLGGKSNSGEGGEDPIRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTETNQTLIENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNYFLYVAEEVRGILAQLGYEKLDDIIGRTDLLQPRDISLVKTQHLDLSYILSNVGLPKWSSTEIRNQEPHNNGPVLDDVLLADPEIADAIENEKVVSKTIKIYNIDRAACGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFGCFLTPGMNIRLVGEANDYVGKGMAGGELAVIPVDNIGFQPEDATIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAEAVVEGTGDHCCEYMTGGCVVILGKVGRNVAAGMTGGLAYILDEDNTLIPKVNREIVRIQRVSAPVGQMKLKSLIEAHVEKTGSNKGAAILKDWDKYLSLFWQLVPPSEEDTPEANAKFGTTATEQVTLQSA. 1654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03864 1653 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 102 528 IPR029055 -
Seca2g03864 1653 Gene3D Aldolase class I 537 923 IPR013785 -
Seca2g03864 1653 Pfam Glutamine amidotransferases class-II 102 524 IPR017932 -
Seca2g03864 1653 FunFam Glutamate synthase, large subunit 102 534 - -
Seca2g03864 1653 Pfam Conserved region in glutamate synthase 937 1321 IPR002932 GO:0006537|GO:0015930|GO:0016638
Seca2g03864 1653 CDD GltS_FMN 940 1335 IPR002932 GO:0006537|GO:0015930|GO:0016638
Seca2g03864 1653 MobiDBLite consensus disorder prediction 70 89 - -
Seca2g03864 1653 CDD GltS 102 519 - -
Seca2g03864 1653 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 922 1337 - -
Seca2g03864 1653 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1359 1634 - -
Seca2g03864 1653 SUPERFAMILY FMN-linked oxidoreductases 671 1359 - -
Seca2g03864 1653 CDD gltB_C 1378 1628 IPR002489 GO:0016491
Seca2g03864 1653 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 102 536 IPR029055 -
Seca2g03864 1653 SUPERFAMILY FMN-linked oxidoreductases 537 653 - -
Seca2g03864 1653 Pfam GXGXG motif 1403 1585 IPR002489 GO:0016491
Seca2g03864 1653 Pfam Glutamate synthase central domain 677 878 IPR006982 GO:0006807|GO:0015930
Seca2g03864 1653 Pfam Glutamate synthase central domain 551 650 IPR006982 GO:0006807|GO:0015930
Seca2g03864 1653 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 104 1635 - -
Seca2g03864 1653 MobiDBLite consensus disorder prediction 74 88 - -
Seca2g03864 1653 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 102 501 IPR017932 -
Seca2g03864 1653 Gene3D Aldolase class I 924 1375 IPR013785 -
Seca2g03864 1653 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1371 1634 IPR036485 GO:0016491
Seca2g03864 1653 Gene3D - 1376 1650 IPR036485 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03864 Seca-Chr2 118740212 118769365 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03864 K00284 - gmx:548016 2999.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03864 2 118740212 118769365 Seca2g03864 2 118740212 118769365 ECH