Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03781 ATGTACCTTTCGCTGCCGCTCCAGTCCACCACCAGTAGGACCATGACAGTGACTGTTTTTACTTGTGATGGAACTACCCCGCCATCTCCTTGTACAGTAACTGTGCCCAAGCAGGGACGATGCAGAGATCTTATCCAGGCCCTTAGCAATGCTTGCTCACTGAAGCATAATGAGAGGCTATTACTTGTGGAGATACGAAACCATTTGATTCATAGATTTTTTGAAGATCCTCTTCTATTGTTGTCTTCCATCAAAGATGATGACCGTCTTGCTGTTTACAAGATTCCAAAGATAGACAAAAACACAAAGTATCTCCAGTTGATACATCGTCGTAGAGAGCAGAATAGTGACTCACAGACCATATCAGGATGGAAACCATATGGGACACCTATTGTTTCATTGATCTCATGTGATGATACAGTCACAAGGGGTGATATACAAGCAATAGTTTACCGTATGCTCTCTCCTCTGCTGAAGAAAGGTGGCAATGTAGAACAGGCTGCTGTTTCTGAAACCAGTGTCCCAAAAGCAACATCTGACCAACGCAGTGATGCAAGTGCTGCCAACAAGGTGTCAAATTCAGTAAATAAGGATGCTACCCTTTCAAAGCCACCAACATTACCTCTTCTGTTAGTAGATGATAATAATGCTTGCATTGATCTTTCAATGGGTGAGGATAAAGTAGTTAAATTATCACCATCATCAACAACAGTTCTAGTGTATATGGATTGGTCTCAGAAGCTTTTGGAGAAGTATGATACTCATCCACTTGAGACTTTGCCAGAAGTTTTGAAATACGGGCCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCCTGTACACCTGCTTAGAAGCTTTTCTGCGTGAAGAACCTCTGGTGCCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCTAGCAAAAAACTTGATTTATGGAGGCTCCCAGAGGTTTTGGTCATTCATCTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTAGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCTCGGCGTCAACTGTACGAACTGTATGCCCTTACAAATCATTATGGTAGCATGGGTAGTGGGCATTACACTGCACATATTAAGCTTTTGGATGAAAATAGGTGGTACAATTTTGATGACAGCCACATTTCACCCATAAGTGAAGACGAGGTTAATACAGCTGCGGCCTATGTTCTATTTTACCGGAGGGTGAAGACTGATGATGCTACTGTAAGCAATGGGGCTTAG 1314 0.4193 MYLSLPLQSTTSRTMTVTVFTCDGTTPPSPCTVTVPKQGRCRDLIQALSNACSLKHNERLLLVEIRNHLIHRFFEDPLLLLSSIKDDDRLAVYKIPKIDKNTKYLQLIHRRREQNSDSQTISGWKPYGTPIVSLISCDDTVTRGDIQAIVYRMLSPLLKKGGNVEQAAVSETSVPKATSDQRSDASAANKVSNSVNKDATLSKPPTLPLLLVDDNNACIDLSMGEDKVVKLSPSSTTVLVYMDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISPISEDEVNTAAAYVLFYRRVKTDDATVSNGA. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03781 437 CDD Peptidase_C19R 271 424 - -
Seca2g03781 437 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 63 426 IPR028889 -
Seca2g03781 437 SUPERFAMILY Cysteine proteinases 278 425 IPR038765 -
Seca2g03781 437 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 368 385 IPR018200 GO:0004843|GO:0006511
Seca2g03781 437 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 425 - -
Seca2g03781 437 MobiDBLite consensus disorder prediction 170 199 - -
Seca2g03781 437 Pfam Ubiquitin carboxyl-terminal hydrolase 300 423 IPR001394 GO:0004843|GO:0016579
Seca2g03781 437 Gene3D Cysteine proteinases 222 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03781 Seca-Chr2 116723626 116739878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03781 279 428 Miscellaneous Gene Families AT4G31670 33.987 5.80e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03781 - - aprc:113861233 800.816