Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03756 ATGGCCAAAGGCGTAATATCTGACGAAGAAGAAGACGTTGAACTTGACGAGGATGAAAGGGAACCCGTTGATGGGGATGGATTGGAAGAGGGTCGTGATATGGACGACGATGAAGAGGATGAAGAAGAGGAAGGACAAGATGAATATGAAAAGGATGGATTTATAGTGGATGACATTGAGGATGAAGAGGAGCAGGATGAAGAAGAAGAGAGAGCAGAAAGTGATGAGGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAGTTGCTGGAGGACAATAATATCAATATTCATCGGCGGAAGGTGAGCAAAAAATTCAAGCGGCTGAAAAAAGGCCAGAGGGATACTGAGGAGGATCCCTCTGGACTATCTGATGAAGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGAGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAGGAGGAGGATGCTGACATTGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGAGCCCCTATGAGGCGAAGTAAGGACAAGAAAAAACCTAAGAAGGCACCAGGAGTCTCTTCGTCAGCCTTACAAGAAGCTCAAGAATTATTTGGTGATGTTGATGAGTTGATTGAGGCTCGCAATCAAAGTCGAGAGCTGAATGAATATAGAGAAACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACCAGATTAGGGAGCTCGATATTCCAGAGAGGATGCAGATCTCAGAGGAAAGTACCGGTGCTCCTCCACTGGATGGAAGTAGTATAGATGAAGAGAGCCAGTGGATAGTTAATCAACTTAGCAATGGAGCAGTCCCTTGGATTTGCAAGAAAATTCCAAGTTCCCAAAACGATGGAAAGGACCTACCAATTGACAAGGATGATATTATCAGATTTTTGGAACTACATCATGTGCAAAAGTTAGATATTCCTTTTATTTCCATGTACCGGAAGGAGGAGTGTTTAAGTCTATTGAAAGATCTAGAGCAACCTGAAGCTGGTGATGAGAATTGGGATAAGAATAACAAGACACCTACTCTAAAATGGCACAAGATACTTTGGGCTCTCCAGGACTTGGACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAATCATACTACAGTAAACGGTTTGAAGAAGAGTCTCGGCGTGTTTATGATGAAACAAGACTAAACTTAAATAGGCAATTGTTTGAATCAGTTATGAGATCATTGAAGGAGGCAGAATCTGAGAGGGAGGTTGACGATGTTGATTCCAAGTTCAACTTGCATTTCCCACCAGGTGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCGAAAAGGAAGTCAATGTATAGCACTTTTAGTAAGGCAGGTCTTTGGGAGGTTGCAAGCAGGTTTGGGTGTAGTTCTGAGCAACTTGGATTATGTCTATCTCTAGTTGAGCTGCATGAGTTGGAAGATCCAAAGGAAACACCGGAAGAGATGGCTTCTAACTTCACTTGTGCTATGTATAATACCCCTGAAGAAGTACTTAAATGTGCTAGGCACATGGCGGCTGTTGAGATAAGTTGTGAGCCTAGCATTAAAAAACATGTTCGTAGCCATTTTCTTGACCATGCTGTGGTGTCAACTTGTCCCTCTGCTGATGGAAATGTAACAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTGAGGATGCACAATGGCTCCTTATACAGAAGGCAGAAGAGGAAAAGCTCATTCAAGTTACTATTAAGCTGCCTGAAGAGTATCTTAATAAGTTAATAGACCAGTTCAATGAGTATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTGCATGATGCAATTTTTCGATTTCTTTTACCGTCAATGGAAAAAGAAGCAAGAGGTGTGTTGGCAAGCAAAGCTAAGAATTGGTTACTTATGGAGTATGGGAAGGCCTTTTGGAGTAAGGTTTCTGTGGGGCCTTATCAACAGAAGGAAAATGATCCTAGCTTAGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTCATGTTAGATTCATCAGGAGAAGTACTAGATGTGCTTTACACTGGGTCGCTTACTTTAAGGTCACAGAACATCAATGACCAACAAAGAAAGAAGAATGACCAGGAACGAGTGTTGAAGTTTATGACAGATCACCAACCACATGTTGTTGTTTTAGGAGCAGTTAATTTGTCCTGCACTCGTTTGAAGGAAGATATATATGAGGTCATTTTTAAGATGGTGGAGGAAAACCCTAGAGATGTTGGGCATGAAATGGATGAGCTCAGCATTGTGTATGGAGATGAATCTCTTCCCCGCCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCGCAGCAAGGTATAGTGAGGCGGGCTGTTGCTCTTGGCCGATATCTCCAGAACCCGTTGGCAATGGTTGCAACGTTATGTGGACCCAGAAAGGAAATATTATCATGGAAACTCAGCCCTCTGGAAAGCTTTCTCAACCCAGATGATAAATTTGGGATGGTTGAACAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTGGCAATAAGTCATGAGTGGCTATTTTCTCCATTACAATTTATCTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCTTGGTAAGAGCCGGTGCAATTTTTACTCGGAAGGATTTTGTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGTTGGATGATACAAGAATTCATCCAGAATCTTATTTTCTTGCACAAGAGTTGGCCAAAGACGTGTATGAGGAAGATGGCACAGGTGATGCAAATGATGATGATGATGCACTGGAGATGGCCATAGAACATGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTGCTGGGAAGAACCGTAAGAACAAAATAGAAACTTTCTATGATATAAAAAGAGAATTAATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAAGAACCAAGTCAGGATGAGGAGTTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGTAAAATTGTCCAAGTTACAGTTCGCAGGGTGCAAGCCCAGAAAGCAATATGTGGACTTGAATCTGGAATGACTGGAATCCTAATGAAAGAAGACTATACAGATGATTGGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATCAAGTCAATCCAAAAGAATAGGTATCAAGTCTTCCTTGTTTGCAAAGATAGTGAAATGAGAAGTAATCGGTTACAGAATAGCCGTGATTTTGATCCTTATTACCATGAAGACCGGAGCTGCTTACAGAGTGAAAAAGACAAAGCTCGGAAAGATAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTCCATCCACGCTTTCAGAACATTACTGCTGATGAAGCAATGGAGTTTGGATGTTACCACATTCCAACTAGTATATGGATTATGGAGTTTTGA 3837 0.4186 MAKGVISDEEEDVELDEDEREPVDGDGLEEGRDMDDDEEDEEEEGQDEYEKDGFIVDDIEDEEEQDEEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKVSKKFKRLKKGQRDTEEDPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRRSKDKKKPKKAPGVSSSALQEAQELFGDVDELIEARNQSRELNEYRETRLEDEFEPIVLSEKYMTEKDDQIRELDIPERMQISEESTGAPPLDGSSIDEESQWIVNQLSNGAVPWICKKIPSSQNDGKDLPIDKDDIIRFLELHHVQKLDIPFISMYRKEECLSLLKDLEQPEAGDENWDKNNKTPTLKWHKILWALQDLDRKWLLLQKRKSALQSYYSKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSSEQLGLCLSLVELHELEDPKETPEEMASNFTCAMYNTPEEVLKCARHMAAVEISCEPSIKKHVRSHFLDHAVVSTCPSADGNVTIDSFHQFAGVKWLREKPLSKFEDAQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKAFWSKVSVGPYQQKENDPSLDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTLRSQNINDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDELSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFGMVEQVMVDVTNQVGLDINLAISHEWLFSPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFVTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYFLAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYAAGKNRKNKIETFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNSRDFDPYYHEDRSCLQSEKDKARKDKELAKKHFKPRMIVHPRFQNITADEAMEFGCYHIPTSIWIMEF. 1279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03756 1278 SUPERFAMILY Nucleic acid-binding proteins 1123 1203 IPR012340 -
Seca2g03756 1278 Pfam HHH domain 1015 1102 IPR041692 -
Seca2g03756 1278 Pfam Holliday-junction resolvase-like of SPT6 739 895 IPR028231 -
Seca2g03756 1278 ProSiteProfiles S1 domain profile. 1128 1199 IPR003029 GO:0003676
Seca2g03756 1278 Pfam Helix-hairpin-helix motif 899 1000 IPR032706 -
Seca2g03756 1278 FunFam Transcription elongation factor spt6 488 751 - -
Seca2g03756 1278 Coils Coil 56 89 - -
Seca2g03756 1278 Gene3D - 730 1120 IPR037027 GO:0006139
Seca2g03756 1278 MobiDBLite consensus disorder prediction 164 200 - -
Seca2g03756 1278 MobiDBLite consensus disorder prediction 140 162 - -
Seca2g03756 1278 FunFam Transcription elongation factor Spt6 1007 1101 - -
Seca2g03756 1278 SUPERFAMILY Ribonuclease H-like 740 895 IPR012337 -
Seca2g03756 1278 SUPERFAMILY RuvA domain 2-like 911 1001 IPR010994 -
Seca2g03756 1278 PIRSF Spt6 2 1264 IPR017072 GO:0032968
Seca2g03756 1278 FunFam Transcription elongation factor spt6 1121 1209 - -
Seca2g03756 1278 Pfam Acidic N-terminal SPT6 35 125 IPR028083 -
Seca2g03756 1278 SUPERFAMILY Tex N-terminal region-like 336 718 - -
Seca2g03756 1278 Gene3D - 295 496 IPR023319 -
Seca2g03756 1278 Gene3D - 1009 1101 IPR042066 -
Seca2g03756 1278 FunFam Transcription elongation factor spt6 730 900 - -
Seca2g03756 1278 Gene3D - 262 1003 - -
Seca2g03756 1278 MobiDBLite consensus disorder prediction 74 93 - -
Seca2g03756 1278 Gene3D - 497 933 IPR023323 -
Seca2g03756 1278 MobiDBLite consensus disorder prediction 1 95 - -
Seca2g03756 1278 FunFam Transcription elongation factor spt6 909 1003 - -
Seca2g03756 1278 MobiDBLite consensus disorder prediction 114 230 - -
Seca2g03756 1278 SMART S1_6 1126 1199 IPR022967 -
Seca2g03756 1278 MobiDBLite consensus disorder prediction 9 73 - -
Seca2g03756 1278 SUPERFAMILY RuvA domain 2-like 1014 1103 IPR010994 -
Seca2g03756 1278 Gene3D - 1121 1209 IPR012340 -
Seca2g03756 1278 SMART rnase_8s 740 858 IPR006641 GO:0006139
Seca2g03756 1278 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1264 IPR017072 GO:0032968
Seca2g03756 1278 FunFam Transcription elongation factor spt6 295 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03756 Seca-Chr2 116160268 116169683 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03756 K11292 - gmx:100809136 2197.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03756 2 116160268 116169683 Seca2g03756 2 116160268 116169683 ECH