Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03671 ATGGAGTCGAGCGTTTTGGAATGCATCGGCGTGGAGATAATCGGCGTAATGTCACCGGTCTCAATCTGCATGTTCCTGGTAGTCCTCCTCGTTTACTCCGTCTCCTCCTCTTCTTCCCCTGACACCGCAATTCGCACCGCCGCAAACCTAGTCTACGTGGAAAACCCTTCCGACACAGCAGCACAGAAACTCGAAGGCGCACTTCTAAACGCCGTCGTTTTCGTCGTCTTAATCGCCATCGTCACTTTCCTCCTCGTCCTCCTCTACTACTACAACTGCACCACCTTCCTCCGCCACTATGTTCGCTTCTCCGCCTTCTTCGTCCTTGGCTCCATGGGCGGATCCATCTTCCTCTCACTCATACAGCGATTCTCTCTCCCTCTCGATTCCATCACGTGCTTCATCCTCCTCTTCAACTTCACCGTCGTCGGTGTTTTATCCGTTTTCGCCGCCGCTGTTCCGATTTTGGTTCGCCAGGGTTATATGGTTTGCCTCGGCATCATCGTCGCCGCGTGGTTCACGAAACTCCCTGAATGGACCACGTGGACGTTGTTGGTGGCTCTCGCGGTGTATGATCTCGTTGCAGTGTTGGCCCCTGGTGGTCCCTTGAAGCTCCTCGTCGAATTGGCCTCTAGCAGGAACGAGGAGCTTCCTGCGCTTGTTTACGAGGCTCGCCCTACCGTGGCGGCAACTGGACACAGCCGTGGGGCTTCTACTTTAGGGCTTTTGGTCACCGGAGTTTCAGAATCGGAATCTTCATCCTCGATCGAGCTTCAAGTCGTGTCTAGAGAGAATGAGAATGCAATTCGTGGTGAGAATGACTCTGGTGTTGTTGTGAGGCAGAGGAGGGGTGATGAAGAAGAGGAAAGGTCTCCGTTGGTTGGTAATCGATTATCGAGCTTGGATTCGGCAATGCGATTTGATGGGAGAGAGGGTGAGGTTGTTGATGAGGAAATGTCTCCGCTTGTTGATATGATTGGGATGGAGAATGAAAGAGAGATGATGAGAAGGGATGCTGAGGAAATTGCTGAGAGGGGTATTAAGCTTGGACTTGGAGACTTTGTTTTCTACAGTGTTCTTGTGGGTAGAGCTGCAATGTATGATCTGATGACAGTGTATGCTTGTTACCTTGCAATTATTTCAGGACTAGGGTGCACTCTTATTTTGTTGTCCGTGTGCCGCCGAGCTCTGCCTGCGCTACCTATTTCTATTACATTGGGTGTTCTTTTCTATTTTTTGACTAGATTGTTAATGGAACCCTTCATTGTTGGGACGGCTACAAATTTAATGATGTTTTGA 1299 0.5027 MESSVLECIGVEIIGVMSPVSICMFLVVLLVYSVSSSSSPDTAIRTAANLVYVENPSDTAAQKLEGALLNAVVFVVLIAIVTFLLVLLYYYNCTTFLRHYVRFSAFFVLGSMGGSIFLSLIQRFSLPLDSITCFILLFNFTVVGVLSVFAAAVPILVRQGYMVCLGIIVAAWFTKLPEWTTWTLLVALAVYDLVAVLAPGGPLKLLVELASSRNEELPALVYEARPTVAATGHSRGASTLGLLVTGVSESESSSSIELQVVSRENENAIRGENDSGVVVRQRRGDEEEERSPLVGNRLSSLDSAMRFDGREGEVVDEEMSPLVDMIGMENEREMMRRDAEEIAERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFIVGTATNLMMF. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03671 432 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca2g03671 432 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca2g03671 432 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca2g03671 432 FunFam Presenilin 325 423 - -
Seca2g03671 432 Pfam Presenilin 11 422 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca2g03671 432 SMART psh_8 65 418 IPR006639 GO:0004190|GO:0016020
Seca2g03671 432 Coils Coil 325 345 - -
Seca2g03671 432 PANTHER PRESENILIN 2 432 IPR001108 GO:0004190|GO:0016020|GO:0016485
Seca2g03671 432 Gene3D Presenilin 326 423 IPR042524 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03671 Seca-Chr2 113636707 113638005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03671 1 432 Miscellaneous Gene Families AT1G08700 64.270 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03671 K04505 - rcu:8268579 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03671 2 113636707 113638005 Seca2g03671 2 113636707 113638005 ECH