Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03614 ATGCTAGCATGCGCTAGCAGCACCCTCCATGGCCGCGTCACACTGCACCGCCACTCCCAGCCTTCTCAGTTCCTCCTCTCCAAGCCTCTTATCTTCCCTATCCGCTCTCGCTTTGCTGCTTCCGGGAAATGCAAGTCCCATTCTCTGTTTTCCTGCAAGAATGGTCACGTGTTCGGTGTCAGAGCTTCCCTAGATGATTCGTCGGAGGTTTCAGAGTCCGTCGTCGGTGTTGGTAGCGCGCATGTTGCGCCGCAACCATATTCCGTGAAGATTCCCGTCGGTGACAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCAAGTGGTTCTGTTACTGTTACAGATGGAGAGACTATTGTGTACACAACTGTTTGTTTGGATGATGTTCCTAGTGAGCCATCCGATTTTTTCCCTCTCTCTGTGAATTACCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGAGGTTTTTTTAAACGAGAAGGAAAGACAAAGGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCACTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACACAAATATTATCTTGGGTTTTAAGCTATGATGGATTACACTCCCCTGATTCCTTGGCTGTCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTGCCTATGTCAAAAGCAGTTGCTGGAGTTCGAATTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACAACCGAGGAGATGCAAAATTCTGAATTGGACCTCTTGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATAGCAATTTTCTTCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCTTTGGTCAAGAAATGTGGCAAACCAAAGATGTTTGATGCCATCAAGTTGCCTCCTCCTGAGCTTTATAAATATGTTGAGGAAATTGCTGGTGATGAATTGGTAAAAGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATCTTTAGAAGAAAAGGTTCTTGAGATACTTTCAGAAAATGGATTTGTCGCAAATGATGCTACACCAAAGAGTAATACTGAAACAATTGCGGAGATTCTTGAAGAAGAGGATGAAGATGAGGAAGTAATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACTGTACGCAAACCAACCCCTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACATCAAAGTTTTTAAGGAAGCGCATAGTAGAGGGGGGGAAAAGGAGTGATGGAAGAACACCAAAAGAAATACGTCCAATTAACTCAAAATGTGGCCTATTACCTAGAGCACATGGAAGTGCTCTTTTTACAAGAGGCGAGACACAGTCACTAGCTGTTGCAACGCTTGGAGATAAGCAGATGGCACAAAGAATAGACAATCTTATAGATGTGGATGAATTCAAGAGGTTCTATCTGCAGTATACATTTCCTCCTTCATGTGTTGGGGAAGTTGGCCGGATTGGTGCACCGAGTAGAAGAGAAATTGGTCATGGAATGCTAGCTGAGAGATCCCTTGAACCAATTTTGCCTTCTGAAAATGATTTCCCTTACACTGTACGCGTTGAGAGTACTATCACAGAAAGCAACGGCTCTTCAAGGTGA 1716 0.4312 MLACASSTLHGRVTLHRHSQPSQFLLSKPLIFPIRSRFAASGKCKSHSLFSCKNGHVFGVRASLDDSSEVSESVVGVGSAHVAPQPYSVKIPVGDRHILVETGHIGRQASGSVTVTDGETIVYTTVCLDDVPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAVAGVRIGLVGDKYIVNPTTEEMQNSELDLLLAGTDSAILMIEGYSNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMFDAIKLPPPELYKYVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVLEILSENGFVANDATPKSNTETIAEILEEEDEDEEVIVDGEVDEGDVHIKPTVRKPTPLFSEVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPKEIRPINSKCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQRIDNLIDVDEFKRFYLQYTFPPSCVGEVGRIGAPSRREIGHGMLAERSLEPILPSENDFPYTVRVESTITESNGSSR. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03614 571 Pfam 3' exoribonuclease family, domain 2 230 292 IPR015847 -
Seca2g03614 571 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 321 451 IPR036456 GO:0003723|GO:0006396
Seca2g03614 571 Gene3D - 402 571 IPR027408 -
Seca2g03614 571 CDD RNase_PH_PNPase_1 87 313 - -
Seca2g03614 571 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 78 570 IPR012162 GO:0003723|GO:0004654|GO:0006402
Seca2g03614 571 Pfam 3' exoribonuclease family, domain 1 96 226 IPR001247 -
Seca2g03614 571 Pfam 3' exoribonuclease family, domain 1 454 569 IPR001247 -
Seca2g03614 571 FunFam Polyribonucleotide nucleotidyltransferase 85 315 - -
Seca2g03614 571 SUPERFAMILY Ribosomal protein S5 domain 2-like 87 226 IPR020568 -
Seca2g03614 571 Gene3D - 78 311 IPR027408 -
Seca2g03614 571 SUPERFAMILY Ribonuclease PH domain 2-like 228 313 IPR036345 -
Seca2g03614 571 SUPERFAMILY Ribosomal protein S5 domain 2-like 427 570 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03614 Seca-Chr2 111781346 111803689 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03614 K00962 - gmx:100819741 904.049