Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03598 ATGCACTCTTCAGATTCCATAGCTCCTGTTGGTGTCCTTCATCCCTCAGCATTTCATTTGGAAAATAAGACAGACGATCAATCTTTAAAATCACAAGACCGAATACATGACATTTGTATTCAGAAACTGGGATCTGTTGTTGAGGTGCATGATAGTCTAGAAAGATGTGAAGCCATGTGCAAACCTGTGGATTATAGCGCTGATCCATTTGATGGCATAGAACATAAATTTAACATTTCAAGAACAAATAACAAGAGCACATTCTCCTTATGTTGCTGGTTGCAAGATTCATATAATGGTTTGCAGGAAGATTTGAAGATTGTTTTGGGGAAAATTGAATCACAATTAGCGGGCTTTGGTTTTGGCTGGGAGAATGTCCTCTATATTCACCTCTATATTGATGACATGAATAAGTTCTCTGTGGCAAATGAGACATATGTGAAGTTTATAACGCAAGAGAAGTGCCCATTTGGTGTCCCATCCCGTAGTACAGTTGAAATGCCTTTAGTAGAAATGGGTTTAAGTAGAGCATACGTTGAAGTTTTGGTAGCAAACAATAAAGACAAGAAGGTTTTGCATGTGCAAAGTATCTCCTGTTGGGCACCTAGTTGCATTGGGCCATACAGCCAGGCAACCTTGCATGAGGGTATACTTCACATGGCTGGTCAATTGGGGCTTGACCCTCCTACGATGAATCTTTGCAATGGAGGCCCTGGTGTTGAACTGGAACAAGCACTAAAAAACAGTGAAGCAGTGGCAAAGTGCTTTAATTGTTCAATATCGACATCTGCAATTGTTTTTGTTATTTACTGTTCTAAATATATCTCATCATTGGAGAGACTTGATATTCAGAAGAAACAAGAAACAATCCTTAGGCTGATGAAGATCTCCAATTTACAGGAAGGAAGCATGTACAAAACGTTAGAACCCATGTTCCTTTATGTCCTTGTTCCTGGTCTACCTAAAAGAGCATGTGTAGAAGTAAAGCCTATTCTTTATGTTGAGGATGACGCAGATGTTGCAATTGAGACCATAACAGAACGATCTTGTTCAAAGACATCATGTTATTGGGGTTTCAAGCAGGAAAGTTGGCATGATTCTTGTGTTCAGAAATGTGTGGTTTCTGGAAAGATATGTGCCATTATATTGTCTATTACAAGTGAGCTGGCTGTGAAGATATGTTCTGATTCTCTGCTTGCACATATGGAGAAGTTATCGAAGTTCTGCATTTATCTTCTTGACAAAGTAATTACAGATAATGACTTTGCCTGGCAAGATATAATGAGTTTGAGGTTCTACATCCCGGCAAGCCTTCAATTGTCAGTGGAGCTATTATATCCTATGTTCAACACTGCACTTTTGGAATTTTCTGAAATGAGTCAGAAGAAAATTATAAATGGTGAGGAGCCAATCTTCAACATAGTTCCTGTCATAGGTGCTGGGAGGTCTGCTTCGTCCATGGATGATGTAGTAACCTGTGAATTACTGGCTCGGAAATGCTGA 1503 0.3939 MHSSDSIAPVGVLHPSAFHLENKTDDQSLKSQDRIHDICIQKLGSVVEVHDSLERCEAMCKPVDYSADPFDGIEHKFNISRTNNKSTFSLCCWLQDSYNGLQEDLKIVLGKIESQLAGFGFGWENVLYIHLYIDDMNKFSVANETYVKFITQEKCPFGVPSRSTVEMPLVEMGLSRAYVEVLVANNKDKKVLHVQSISCWAPSCIGPYSQATLHEGILHMAGQLGLDPPTMNLCNGGPGVELEQALKNSEAVAKCFNCSISTSAIVFVIYCSKYISSLERLDIQKKQETILRLMKISNLQEGSMYKTLEPMFLYVLVPGLPKRACVEVKPILYVEDDADVAIETITERSCSKTSCYWGFKQESWHDSCVQKCVVSGKICAIILSITSELAVKICSDSLLAHMEKLSKFCIYLLDKVITDNDFAWQDIMSLRFYIPASLQLSVELLYPMFNTALLEFSEMSQKKIINGEEPIFNIVPVIGAGRSASSMDDVVTCELLARKC. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03598 500 SUPERFAMILY YjgF-like 190 336 IPR035959 -
Seca2g03598 500 Gene3D - 80 183 IPR035959 -
Seca2g03598 500 SUPERFAMILY YjgF-like 98 171 IPR035959 -
Seca2g03598 500 Pfam Endoribonuclease L-PSP 102 181 IPR006175 -
Seca2g03598 500 Pfam Endoribonuclease L-PSP 201 331 IPR006175 -
Seca2g03598 500 FunFam Endoribonuclease 66 184 - -
Seca2g03598 500 Gene3D - 184 334 IPR035959 -
Seca2g03598 500 PANTHER DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN 1 497 IPR030662 -
Seca2g03598 500 CDD eu_AANH_C_2 208 332 - -
Seca2g03598 500 FunFam Endoribonuclease 185 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03598 Seca-Chr2 111410053 111413939 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03598 K06927 - gmx:100807009 831.247