Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03574 ATGGCTTCTTCTCGCGTAGCCTTCCTTGCCATTTCTATGGTTTTGCTTTCCTCAGTTGCTATGGCAACTGATTACATTGTGGGTGATAACAATGGCTGGAAAACTGATTTTAACTACACTCAGTGGGCTCAGGACAAAGTTTTCCGTGTTGGTGACAACCTTTTGTTCAATTACGACAATACGAAGCACAATGTGTTCAAAGTGAATGGAACACAGTTCAAAGACTGCACTGTCCCACCAGAAAACGAAGCACTTACAAGTGGGAAGGACGTGATTCCACTGAAAAGTGAAGGGAGGAAGTGGTATATTTGTGGGAAGCCCAACCATTGCTCTGATCACCAAATGAAGCTTGTCATCAATGTTGTTGCTGAAGTTGCTATGGCAACTGATTACGTTGTGGGTGATACCAATGGCTGGAAAACTGATTTTAACTACACTCAGTGGGCTCAGGACAAAGTTTTCCGTGTTGGTGACAACATTGTGTTCAATTATGACAATACAAAGCACAATGTGTTCAAAGTGAATGGAACACAGTTCAAAGACTGCACTGTACCACCAGAAAACGAAGCACTTACAAGTGGGAAAGACGTGATTCCATTGAAAAGTGAAGGGAGGAAGTGGTATATTTGTGGGAAGCCCAACCATTGCTCTGTTGTTGCTGAAGGTCCTGCTCCTGCTCCTTCTGTTGCTCACTCTGTTTCATCTTCTCTGTTTGGGGCTATCATGGCATCCATGGTTGCCATTACAGTCATTTCAATATTTACAGTTATAGGACTCATCTTCATCCCTCTTGGTCTTTCTTCATTGTTTGCATCAGAGAGTGTGGTGGAAGTTCCATACAGATATGATGATCAATGCCTCCCACCTGATTATAGAGATGATGCAATGGCATATATCAAAGATGATAGCTCAAACAAAACTTGCACCAGGACATGGACTGTTAAGAATAAAATGAAAGCCCCTATATATGTCTATTATCAGCTTGATAACTTTTACCAAAACCATCGCCGATATGTCAAAAGTAGAAATGATAATCAACTAAAAAGTAAGTCAGCTGAGAGTGATGTAAGCTCATGTAGCCCTGATGACTATACACCAAATCATCAACCAATTGTTCCTTGTGGCCTTATTGCATGGAGTATGTTCAATGACACATACAGACTTTCAAACAGTAATAAAGATTTGGTGATCAACAAAAAGAACATAGCATGGAAGAGTGACCAAAATGCCAAATTTGGGTCTGATGCTGGAGGTTTGATTGGTGGTGCTAGACTGAATGAGAGCATACCTTTGAGTGAACAAGAGGATCTCATTGTTTGGATGAGAACAGCAGCACTGCCAACTTTCAGAAAATTATATGGGAAGATTGAGGCTGACCTTGAAGTTAATGATGAAATAATGATAGTCATAGAGAACAATTATAATACATACCAGTTTGGAGGAAAAAAGAGCCTTGTTCTTTCAACCACAACATGGGTTGGTGGAAAAAATCACTCCTTGGGGTTGGCATATATTTTCATTGGTGGGGTTTCCTTGTTATTGGCTGTAGGTTTCCTACTTATGTATGTAATGAAGCCAAGGTCCATGGCTGTGGCAAAAGATTTCATAGTTGGAGATGATAGTGGCTGGACAACCGGGTTTGATTACCATGCTTGGGCTGCAAACAAGGTCTTTCGTGTTGGTGACACACTTACATTCAAGTATCCGGCTGGGAAGGACAATGTGATTAGAGTGAATGGAAGTGACTTCATAAACTGCTCGGTTCCTCCAAATGCACCGGTATTGAGTAATGGATACAATACATTTGTATTGGCAAACACAGGGAGAAGATGGTACATTTCTGGTGTTGCTAATCACTGCAAATCTGGCCAAAAGCTTGTTATAACTGTGCTGCCACCACAAGGAATTACATGGTCTCCAGCACCTTCACCTTCACCCGTGCCCTCTGAAGTACCATCTCCACATGCTGCACCATGGCCTGCTAGTATTCCCCATTTTGGTCTATCGCTGCCAAAGAAGATCAAAATGTTTCAGTGA 2037 0.4168 MASSRVAFLAISMVLLSSVAMATDYIVGDNNGWKTDFNYTQWAQDKVFRVGDNLLFNYDNTKHNVFKVNGTQFKDCTVPPENEALTSGKDVIPLKSEGRKWYICGKPNHCSDHQMKLVINVVAEVAMATDYVVGDTNGWKTDFNYTQWAQDKVFRVGDNIVFNYDNTKHNVFKVNGTQFKDCTVPPENEALTSGKDVIPLKSEGRKWYICGKPNHCSVVAEGPAPAPSVAHSVSSSLFGAIMASMVAITVISIFTVIGLIFIPLGLSSLFASESVVEVPYRYDDQCLPPDYRDDAMAYIKDDSSNKTCTRTWTVKNKMKAPIYVYYQLDNFYQNHRRYVKSRNDNQLKSKSAESDVSSCSPDDYTPNHQPIVPCGLIAWSMFNDTYRLSNSNKDLVINKKNIAWKSDQNAKFGSDAGGLIGGARLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEADLEVNDEIMIVIENNYNTYQFGGKKSLVLSTTTWVGGKNHSLGLAYIFIGGVSLLLAVGFLLMYVMKPRSMAVAKDFIVGDDSGWTTGFDYHAWAANKVFRVGDTLTFKYPAGKDNVIRVNGSDFINCSVPPNAPVLSNGYNTFVLANTGRRWYISGVANHCKSGQKLVITVLPPQGITWSPAPSPSPVPSEVPSPHAAPWPASIPHFGLSLPKKIKMFQ. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03574 678 MobiDBLite consensus disorder prediction 343 362 - -
Seca2g03574 678 CDD Phytocyanin 129 216 - -
Seca2g03574 678 ProSiteProfiles Phytocyanin domain profile. 533 632 IPR003245 GO:0009055
Seca2g03574 678 CDD Phytocyanin 23 121 - -
Seca2g03574 678 SUPERFAMILY Cupredoxins 21 122 IPR008972 -
Seca2g03574 678 ProSiteProfiles Phytocyanin domain profile. 23 123 IPR003245 GO:0009055
Seca2g03574 678 PANTHER CELL CYCLE CONTROL PROTEIN 50 246 530 IPR005045 GO:0016020
Seca2g03574 678 FunFam Cupredoxin superfamily protein 127 221 - -
Seca2g03574 678 CDD Phytocyanin 533 630 - -
Seca2g03574 678 SUPERFAMILY Cupredoxins 532 631 IPR008972 -
Seca2g03574 678 Gene3D - 531 634 IPR008972 -
Seca2g03574 678 Gene3D - 127 221 IPR008972 -
Seca2g03574 678 Gene3D - 21 126 IPR008972 -
Seca2g03574 678 Pfam Plastocyanin-like domain 543 624 IPR003245 GO:0009055
Seca2g03574 678 Pfam Plastocyanin-like domain 139 217 IPR003245 GO:0009055
Seca2g03574 678 Pfam Plastocyanin-like domain 33 112 IPR003245 GO:0009055
Seca2g03574 678 SUPERFAMILY Cupredoxins 127 217 IPR008972 -
Seca2g03574 678 FunFam Cupredoxin superfamily protein 21 126 - -
Seca2g03574 678 ProSiteProfiles Phytocyanin domain profile. 129 231 IPR003245 GO:0009055
Seca2g03574 678 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 269 527 IPR005045 GO:0016020
Seca2g03574 678 FunFam Cupredoxin superfamily protein 531 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03574 Seca-Chr2 110889024 110909251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03574 529 663 Miscellaneous Gene Families AT2G32300 37.778 4.08e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03574 K26935 - gmx:100779539 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03574 2 110889024 110909251 Seca2g03574 2 110889024 110909251 ECH