Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca2g03440 | ATGGGCGCTAGCAGCGACCCGACCCAAGACGGGTCGGACGAGCAGCAAAAGCGTTCCGAGATCTACACCTACGAAGCACCCTGGCACATCTACGCCATGAACTGGAGCGTTCGCCGCGACAAAAAGTACCGTCTCGCTATCGCTTCCCTTCTCGAACAGTACCCTAACCGTGTCGAAATCGTCCAATTAGATGATTCCAACGGCGAGATCCGATCCGACCCGAACCTCTCCTTCGAACACCCATACCCGCCTACCAAAGCCATCTTCATCCCTGACAAAGAGTGCCAGCGCCCTGACCTCCTCGCCACCTCAAGTGACTTCCTCCGTGTCTGGCGGATCTCCGACCCGGATGAAAACCAAACCCGGGTCGAACTCAAAAGCCTCTTAAACGGCAACAAAAACAGCGAGTATTGCGGTCCTTTAACCTCCTTCGATTGGAACGAAGCCGAACCAAAACGCATCGGAACCTCAAGCATCGACACAACCTGCACGATATGGGACATCGAAAAGGAAACCGTTGATACTCAATTAATCGCGCATGATAAAGAGGTTTACGACATCGCTTGGGGAGGAGTTGGCGTTTTCGCTTCAGTCTCTGCCGACGGTTCCGTTAGGGTTTTCGATCTTCGCGATAAGGAGCATTCCACCATCATTTACGAGAGCTCCGAACCTGACACGCCGTTGGTTCGGCTAGGATGGAACAAGCAGGACCCTCGCTATATGGCTACTATCATAATGGATAGTGCTAAGGTGGTGGTGTTGGATATTCGCTTCCCCACGCTTCCTGTGGTGGAGCTTCAGCGGCATCAAGCGAGTGTGAACGCAATTGCGTGGGCCCCGCATAGTTCTTGCCATATCTGCACCGCAGGGGATGATTCTCAGGCTCTAATTTGGGACTTATCTTCCATGGGTCAACCCGTTGAAGGTGGACTTGACCCGATTCTTGCGTACACTGCTGGTGCTGAGATTGAGCAGCTTCAGTGGTCTTCTTCTCAGCCTGATTGGGTTGCAATTGCTTTCTCCACCAAGCTTCAGATTCTCAGGGTGTGA | 1050 | 0.5286 | MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPNLSFEHPYPPTKAIFIPDKECQRPDLLATSSDFLRVWRISDPDENQTRVELKSLLNGNKNSEYCGPLTSFDWNEAEPKRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV. | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca2g03440 | 349 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 286 | 300 | IPR019775 | - | |
| Seca2g03440 | 349 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 266 | 302 | IPR001680 | GO:0005515 | |
| Seca2g03440 | 349 | PANTHER | WD REPEAT CONTAINING PROTEIN | 12 | 349 | IPR045159 | - | |
| Seca2g03440 | 349 | FunFam | WD repeat-containing protein LWD1 | 17 | 348 | - | - | |
| Seca2g03440 | 349 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 266 | 302 | - | - | |
| Seca2g03440 | 349 | SUPERFAMILY | WD40 repeat-like | 30 | 342 | IPR036322 | GO:0005515 | |
| Seca2g03440 | 349 | Pfam | WD domain, G-beta repeat | 266 | 299 | IPR001680 | GO:0005515 | |
| Seca2g03440 | 349 | Pfam | WD domain, G-beta repeat | 177 | 208 | IPR001680 | GO:0005515 | |
| Seca2g03440 | 349 | Gene3D | - | 13 | 348 | IPR015943 | GO:0005515 | |
| Seca2g03440 | 349 | SMART | WD40_4 | 170 | 208 | IPR001680 | GO:0005515 | |
| Seca2g03440 | 349 | SMART | WD40_4 | 122 | 167 | IPR001680 | GO:0005515 | |
| Seca2g03440 | 349 | SMART | WD40_4 | 259 | 299 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca2g03440 | Seca-Chr2 | 106232410 | 106233459 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca2g03440 | K11805 | - | pop:7466288 | 688.723 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Seca2g03440 | 2 | 106232410 | 106233459 | Seca2g03440 | 2 | 106232410 | 106233459 | ECH |