Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03429 ATGGCTACTTCTCTCCTCCCAAGGCCACAACACATTTCCACACCCCTCATCTCCAAGCTCAGCTCTTCCCCCAGAACTTGGAGGCTCTTCATCCTCAGCTACCCTTTACACCACAAAAACACCAAAAGGCTATTATTACCCTTGCCCACCAATGCAGTCTACACACAGGGCCTCTATTTCCCTTCTTCACCCTCCAAAATCGAGAAAATTGAGCAGGAGAATGACCCCATCTCAGTGTTGAACGAGAGGATTCGCCGTGACTATGGAAACAGAGAGGTTTCAAGGACTGTGATGGACTCGGAGGAGGCTGACAAGTACATACAATTGGTGAAGGAGCAGCAGCAGAGGGGGCTGCAGAAGCTGAAAGGTGAAAGGGAGGGTAAAGACGGTACCTTTAGCTACAAGGTAGACCCTTACACACTTCGTTCTGGGGACTATGTTGTGCACAAGAAAGTGGGTATTGGGAGGTTTGTTGGGATCAAGATCGATGTTCCAAAGAATTCTACAGAACCAACTGAGTATGTTTTCATAGAGTATGCAGATGGGATGGCAAAGCTCCCTGTTAAACAGGCCTCTAAAATGCTCTATAGATATAGTCTTCCAAATGAAAACAAAAAGCCTCGGGCATTGAGCAAGTTGAATGATACTAGTGTGTGGGAGAAAAGAAAGATTAAAGGGAAGGTCGCCATACAGAAGATGGTTGTTGACTTGATGGAACTATATCTGCATAGACTCAAACAAAGGAGGCCTCCCTATCCAAAAAGTCCTTCTATGGCTGAATTTTCAGCTCAATTTCCTTATGAACCCACCCCGGATCAGAAACAGGCTTTTATTGATGTCGAAAAGGATTTGACAGAACGAGAAACACCAATGGACAGATTGATTTGTGGGGATGTCGGTTTTGGTAAAACTGAGGTTGCACTACGTGCTATCCACTGTGTTGTCACAGCTAAAAAGCAAGCGATGGTTCTTGCACCAACAATAGTTCTAGCGAAACAACATTTTGATGTTATTTCAGAACGCTTTTCTGTATATCCTGATATTAAAGTTGGACTACTAAGTAGGTTTCAGACCAGATCAGAGAAAGAAGAGCACTTGGAAAAGATTAAGAATGGTGACCTGGATATTATTGTTGGCACTCACTCACTCCTAGGAAATCGTGTTGTATATAATAATCTTGGCGTGCTTGTGGTTGATGAGGAACAGAGATTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTCAAAACTTCTGTGGATGTACTCACTTTATCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTGACAGGTTTTCGTGATGCTAGTTTAATTACAACGCCACCTCCAGAAAGAGTTCCTATCAAGACCCACCTTTCTTCATTCAGTAAGGACAAAGTAATATCGGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTTTTTTATGTTCTGCCACGCATTAAAGGACTTGAAGAAGTAATGGAATTTCTTGAAGAGTCATTCCCAGATGTGGAAATAGCCGTTGCCCATGGGAAGCAATACTCAAAGCAATTAGAGGATACCATGGAGAAGTTTGCTCTAGGCGAAATAAAAATCCTTATCAGCACAAACATCGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACCATTATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGGTTTTTTATCTTCCTAATTTCATCTTCTTTTTGCTGCATTTTCCAACATTGTTCAATCAGTTTATTGGAAATTCTTTACTATATAATATTTTGGGATTATTGGCCATTAAATTACTGTTGCGTGGAAGGGTTGGACGGGCAGATAAGGAAGCATATGCACACTTATTTTATCCTGATAAAAATCTGCTCTCTGATCAAGCATTGGAGAGGCTTGCTGCTCTTGAAGAATGCCGTGAACTTGGTCAAGGCTTCCAACTAGCAGAGAGAGACATGGGTATAAGAGGTTTTGGCACTATTTTTGGCGAACAGCAAACAGGAGATGTTGGAAATGTTGGCATTGATCTTTTCTTTGAGATGCTCTTTGAGAGTTTGTCCAAGGTTGAAGATCACCGTATTGTATCAGTTCCCTATGACTCAGTGCAGGTTGACATAAACATCAATCCTCATCTCCCTTCTGAATATATAAATCATCTGGAAAACCCTATGGAAATATTAAATGAAGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTCACCGAGAATTTGCGGCGCCAATATGGCAAAGAGCCTCGTCCCATGGAGATTTTATTGAAGAAGCTTTACTTGAGGAGAATGGCGGCTGATATAGGGGTAACCAGAATTTACTCTTCAGGGAAGATAGTCTTTATGAAAACAAACATGAGTAAAAAGGTATTCAAGATAATGACCGAGTCGATGACATCAGATATATATAGAAATTCATTGGTCCTTGAGGGCAACCACATCAAGGCTGAACTTCTATTAGAGCTACCAAGAGAACAACTTCTTAATTGGATCTTTCAATGTGTGGCTGAACTTCATGCTTCACTACCTGCCCTCATAAAGTACTAG 2586 0.4161 MATSLLPRPQHISTPLISKLSSSPRTWRLFILSYPLHHKNTKRLLLPLPTNAVYTQGLYFPSSPSKIEKIEQENDPISVLNERIRRDYGNREVSRTVMDSEEADKYIQLVKEQQQRGLQKLKGEREGKDGTFSYKVDPYTLRSGDYVVHKKVGIGRFVGIKIDVPKNSTEPTEYVFIEYADGMAKLPVKQASKMLYRYSLPNENKKPRALSKLNDTSVWEKRKIKGKVAIQKMVVDLMELYLHRLKQRRPPYPKSPSMAEFSAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIHCVVTAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTRSEKEEHLEKIKNGDLDIIVGTHSLLGNRVVYNNLGVLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKDKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAVAHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQNANTIIIQDVQQFGLAQLYQVFYLPNFIFFLLHFPTLFNQFIGNSLLYNILGLLAIKLLLRGRVGRADKEAYAHLFYPDKNLLSDQALERLAALEECRELGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRIVSVPYDSVQVDININPHLPSEYINHLENPMEILNEAERVAEKDIWSLMQFTENLRRQYGKEPRPMEILLKKLYLRRMAADIGVTRIYSSGKIVFMKTNMSKKVFKIMTESMTSDIYRNSLVLEGNHIKAELLLELPREQLLNWIFQCVAELHASLPALIKY. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03429 861 Gene3D - 144 204 - -
Seca2g03429 861 Gene3D - 205 448 IPR027417 -
Seca2g03429 861 SUPERFAMILY CarD-like 135 204 IPR036101 -
Seca2g03429 861 CDD DEXHc_TRCF 255 448 - -
Seca2g03429 861 Pfam CarD-like/TRCF domain 141 241 IPR003711 -
Seca2g03429 861 SUPERFAMILY TRCF domain-like 705 850 IPR037235 -
Seca2g03429 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 692 IPR027417 -
Seca2g03429 861 Gene3D - 141 569 IPR027417 -
Seca2g03429 861 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 446 IPR014001 -
Seca2g03429 861 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 608 708 - -
Seca2g03429 861 Pfam TRCF domain 713 799 IPR005118 GO:0006281
Seca2g03429 861 Gene3D - 707 854 IPR037235 -
Seca2g03429 861 SMART ultradead3 265 457 IPR014001 -
Seca2g03429 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 451 IPR027417 -
Seca2g03429 861 SMART CarD_TRCF_2 140 242 IPR003711 -
Seca2g03429 861 Gene3D - 606 704 IPR027417 -
Seca2g03429 861 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 660 IPR001650 -
Seca2g03429 861 SMART helicmild6 493 616 IPR001650 -
Seca2g03429 861 SMART TRCF_a_2_a 711 809 IPR005118 GO:0006281
Seca2g03429 861 Pfam DEAD/DEAH box helicase 291 429 IPR011545 GO:0003676|GO:0005524
Seca2g03429 861 Pfam Helicase conserved C-terminal domain 470 566 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03429 Seca-Chr2 105764029 105776233 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03429 - - gmx:100791900 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03429 2 105764029 105776233 Seca2g03429 2 105764029 105776233 ECH