Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03416 ATGGATCATGTTTTGTTAGCATCACAGGAGACGAAGGAAGCGAGGGAGATGAGAATTCGAAGCCTTTTTGGTTTCTTTGATAAGGAGAATAATGGGTTCTTGGAATATACACACATTGAGGAGGGTCTCTCTGCTCTTCAGATTCCTTCTGAGTATAAGTATGCGAAGGATTTGTTGAATGCTTGTGATGTTAACAAGGATGGGAGAGTTGATTACACGGAGTTCAAGAGGTACATGGATGACAAGGAGCTTGAACTTTACCGCATATTTCAGGCCATTGATGTTGAGCATAATGGGTGCATTGTGCCAGAGGAGCTCTGGGAGGCACTTGTAAGAGCAGGCATGTCTTGTGTTGTGTTGCTATGTTCATTTTACTATTCACTCTTAGGGATTAAGATCGATGATGAGGAGCTTGCTCGCTTTGTTGAGCGTGTGGATAAGGATAATAATGGCGTTATAACATTTGAGGAATGGAGGGATTTTCTGTTGCTTTACCCTCACGAGGCGACTATTGAGAACATTTACCATTATTTGGAGCGGATATGCATGGTTGATATTGGGGAGCAAACTGTTATTCCTGCAGGTGTTGCTAAGCACATTCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCAGCATCACGCACAGCAACTGCACCCCTTGATCGTCTAAAGGTTGTATTGCAAGTCCAAACAACACGAGCTCATATAATGCCTGCAATAAAAAATATATGGAAAGAAGGTGGCATTTTAGGATTTTTTCGAGGCAATGGCTTAAATGTTCTTAAGGTTGCCCCTGAGAGTGCCATTAGATTTTATACCTATGAGATGCTGAAGACCTTCATTGCGAATGCTAAAGGAGAAGGGGCAAAGGCTGATATTGGAGCTACGGGGCGGCTGCTAGCTGGTGGTATAGCTGGTGCTGTAGCTCAAACTGCGATATATCCAATGGATCTTGTTAAAACACGACTACAAACATATGCTTGCGCAAGTGGAAAAATTCCTAGCCTTGGAACCCTTTCAAAAGATATATGGGTTCATGAAGGTCCCCGGGCTTTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCGTATGCTGGGATAGATCTTGCTGCATATGAAACCTTGAAGGATATGTCCAAAATGTATATTCTTAATGATGGAGAACCTGGCCCTCTTGTACAATTAGGATGTGGGACAGTGTCAGGAGCTGTTGGAGCAACATGTGTTTACCCATTGCAGGTTGTTAGAACAAGAGCTGTTGATTTTAGAATGCAGGCTCAAAACTGCTATAAGGGAATGGCTGATGTATTCAGGAAAACCTTGGAAAATGAAGGATTTAGGGGATTCTACAAAGGAATATTCCCTAACTTGCTCAAAGTTGTACCATCAGCAAGTATCACTTACATGGTTTACGAGTCTATGAAAAAAAGTTTGGATTTGGAGTGA 1461 0.4244 MDHVLLASQETKEAREMRIRSLFGFFDKENNGFLEYTHIEEGLSALQIPSEYKYAKDLLNACDVNKDGRVDYTEFKRYMDDKELELYRIFQAIDVEHNGCIVPEELWEALVRAGMSCVVLLCSFYYSLLGIKIDDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEQTVIPAGVAKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRAHIMPAIKNIWKEGGILGFFRGNGLNVLKVAPESAIRFYTYEMLKTFIANAKGEGAKADIGATGRLLAGGIAGAVAQTAIYPMDLVKTRLQTYACASGKIPSLGTLSKDIWVHEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKMYILNDGEPGPLVQLGCGTVSGAVGATCVYPLQVVRTRAVDFRMQAQNCYKGMADVFRKTLENEGFRGFYKGIFPNLLKVVPSASITYMVYESMKKSLDLE. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03416 486 ProSiteProfiles Solute carrier (Solcar) repeat profile. 394 482 IPR018108 -
Seca2g03416 486 PANTHER SOLUTE CARRIER FAMILY 25 158 484 - -
Seca2g03416 486 Pfam EF-hand domain pair 85 160 IPR002048 GO:0005509
Seca2g03416 486 ProSitePatterns EF-hand calcium-binding domain. 146 158 IPR018247 -
Seca2g03416 486 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Seca2g03416 486 Gene3D - 4 179 - -
Seca2g03416 486 Pfam EF hand 56 77 IPR002048 GO:0005509
Seca2g03416 486 ProSiteProfiles EF-hand calcium-binding domain profile. 133 168 IPR002048 GO:0005509
Seca2g03416 486 ProSiteProfiles Solute carrier (Solcar) repeat profile. 200 283 IPR018108 -
Seca2g03416 486 FunFam Mitochondrial substrate carrier family protein 196 484 - -
Seca2g03416 486 FunFam Mitochondrial substrate carrier family protein 1 84 - -
Seca2g03416 486 Gene3D Mitochondrial carrier domain 196 484 IPR023395 -
Seca2g03416 486 PRINTS Mitochondrial carrier protein signature 403 425 IPR002067 GO:0055085
Seca2g03416 486 PRINTS Mitochondrial carrier protein signature 258 278 IPR002067 GO:0055085
Seca2g03416 486 PRINTS Mitochondrial carrier protein signature 356 374 IPR002067 GO:0055085
Seca2g03416 486 PRINTS Mitochondrial carrier protein signature 205 218 IPR002067 GO:0055085
Seca2g03416 486 PRINTS Mitochondrial carrier protein signature 218 232 IPR002067 GO:0055085
Seca2g03416 486 PRINTS Mitochondrial carrier protein signature 311 329 IPR002067 GO:0055085
Seca2g03416 486 SMART efh_1 18 46 IPR002048 GO:0005509
Seca2g03416 486 SMART efh_1 137 165 IPR002048 GO:0005509
Seca2g03416 486 SMART efh_1 85 113 IPR002048 GO:0005509
Seca2g03416 486 SMART efh_1 54 82 IPR002048 GO:0005509
Seca2g03416 486 SUPERFAMILY EF-hand 10 193 IPR011992 -
Seca2g03416 486 SUPERFAMILY Mitochondrial carrier 199 477 IPR023395 -
Seca2g03416 486 Pfam Mitochondrial carrier protein 296 383 IPR018108 -
Seca2g03416 486 Pfam Mitochondrial carrier protein 395 483 IPR018108 -
Seca2g03416 486 Pfam Mitochondrial carrier protein 199 286 IPR018108 -
Seca2g03416 486 ProSitePatterns EF-hand calcium-binding domain. 63 75 IPR018247 -
Seca2g03416 486 ProSiteProfiles Solute carrier (Solcar) repeat profile. 296 383 IPR018108 -
Seca2g03416 486 ProSiteProfiles EF-hand calcium-binding domain profile. 50 85 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03416 Seca-Chr2 105372552 105374865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03416 1 486 EF-hand Containing Proteins AT5G51050 70.637 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03416 K14684 - gmx:100775805 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03416 2 105372552 105374865 Seca2g03416 2 105372552 105374865 ECH