Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03415 ATGTGTGAACCAGAGACCAAATCGCCTCTTTCCCCTTCACCTTTACCCTCAACTCCTGGAATTCCATTCACCCCTACAACCCCCGAAATTTATTCCCGTTATAATTTGAATCCAAACATCTTGAAACGAATGCAATCGGATAAATGCTTCAAGTGTAACCAAGTAGGACACTGGGCTCAGTGTTGCCCTTCGAACTCACCCAACAACAAACCCTTCACTCCCTCACCCAACCATCATTTCCCTAATAAGATACAGTGCCGTTGTGGTCATGGCTCTTGCGATATCAAAACTGCTAACAACAGCAGAAACAGTGGAAGGAGATACTATGTTTGCCCCATCAAAAGGGGGGTAAGATGTAAGGACTTTGTGAAATGGTGTGATGATCACATCGATGATAGTGAATTGCAGCCTCCTTTGTTCAAGTATCCTGTGTGTGAATGTGGAGCTGGAGTGTGTAGAAGGGTGCAGGGAACACCAGAAACCCCTGGTGATATTAAGTACTATTTTGTGTGCCCTGTGAGAAAGCCATTTATTTGCATTATTCATCTTGTTCTTGAGGGAAGATTAATGAATTGTGGGGGTGAAGGGTGGATCACTGGATTGGATTTCCTTATGATAGTGAAACATGTTGTGATGAATAAGGATCATGGGTCTTGTGGATATCGAGTCTCAGAAGATGAATTGCTGAATTGCACAAGCATTGTTCCTAGCCGGCAAAGATCTCTGGATGAATTTTTGGAAGGCTGCCAAAATGATGAACCTGACAATGACTTGGGTAAGGAATGTGATTTGCTAGTACAGAACAAAAGGATGAGAATCATGGATGATTCTAAGATTCCCTTGTCAATTGCTGTATCTGAGATTCCAGAGGGCGAAGATGGAGGATCAGCAATAAAGGCTGCCGGTTTGGAACATGTTGATTTTCCAGAATTTGAGATTTCTGATGATGATTTAGAATTTACCAATTCAGTGCCATGGGAGGATATTGAGGCAGAAGCTTTTGTATCATCTAGTCTGTCAACACCTTCAAGGATCCATAATCGACAGAGTGTATTTGAGAAGGACCTTGATGATGCATCATTTGGTTCTTGTCCGACCGGTTGGTTAGGTCGCCTTCTTTTCATCCATCCAACTCAAACTTTGAAATTCCCCCAATCTCAGCCAATTTTTTGCTACGTTTTTCCATCATTTAATCCTATAGTTGTTCCTAAACAAGAAAACATTCCTGATGGTTCTCTTGAATGCAACAACCTTGCTATTAACAGTCTCAGTCAATCTACCCAACTTGCAACTGGTTGCTATACTGAGGTCTCTAAAGTTGTAGTTAGTCCTATTAAATCACCAGGTAGTGAAAGCAAGCTAATGTTAAAGGAACAAAGGCAAAGAGAAGTGATCTTATTTACACAAAAACGGCTTCTCAGTGATATAGAGACTTTCGATCCTCATGAGCATGAGTCTATGAGAGAGGCAGCTGAGATCACTTTTGCATTATTAGATCGATTAGCAGTTGATTATAAACAATTTTCTGAGCATATATGGAATTATATCAATCTTGCATCATCCATTGCTGAAATGGATAAGTCCATGAAAAATTCCCTTACTTTGGAGGAACACAATAAACTCTTTGAGGAGGAGAATATGAGACTGGCTCACATCCAAGACCACTGTGTCAAGACTGAGGCTCTGCTTGAAGCATCTAATCATCATAGGCAATTGCTTTGTGAAGAGGTCTCCCATCTCAAGGCCACGCTCCATGAAAAGCAAAACCAATTAAAATCTTGTGAGTTGGAGATGATGAAGATAGAGACCGATCTTGGTGATATGAAAAGAAGAAAGTTGGAGGTTGACATGATCTTAAGGGATAGAGCTGAGCAAGCAGAAATGGCAAGGAAACAAATTGAAGAGAAACAGGCAAAGCAAATTGCAGCCAAGACAGCACTGGAGAAAGCCAAACTTGAATTGGAAAATTAG 1971 0.4105 MCEPETKSPLSPSPLPSTPGIPFTPTTPEIYSRYNLNPNILKRMQSDKCFKCNQVGHWAQCCPSNSPNNKPFTPSPNHHFPNKIQCRCGHGSCDIKTANNSRNSGRRYYVCPIKRGVRCKDFVKWCDDHIDDSELQPPLFKYPVCECGAGVCRRVQGTPETPGDIKYYFVCPVRKPFICIIHLVLEGRLMNCGGEGWITGLDFLMIVKHVVMNKDHGSCGYRVSEDELLNCTSIVPSRQRSLDEFLEGCQNDEPDNDLGKECDLLVQNKRMRIMDDSKIPLSIAVSEIPEGEDGGSAIKAAGLEHVDFPEFEISDDDLEFTNSVPWEDIEAEAFVSSSLSTPSRIHNRQSVFEKDLDDASFGSCPTGWLGRLLFIHPTQTLKFPQSQPIFCYVFPSFNPIVVPKQENIPDGSLECNNLAINSLSQSTQLATGCYTEVSKVVVSPIKSPGSESKLMLKEQRQREVILFTQKRLLSDIETFDPHEHESMREAAEITFALLDRLAVDYKQFSEHIWNYINLASSIAEMDKSMKNSLTLEEHNKLFEEENMRLAHIQDHCVKTEALLEASNHHRQLLCEEVSHLKATLHEKQNQLKSCELEMMKIETDLGDMKRRKLEVDMILRDRAEQAEMARKQIEEKQAKQIAAKTALEKAKLELEN. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03415 656 SUPERFAMILY Retrovirus zinc finger-like domains 43 68 IPR036875 GO:0003676|GO:0008270
Seca2g03415 656 Coils Coil 619 653 - -
Seca2g03415 656 Coils Coil 577 611 - -
Seca2g03415 656 PANTHER OS07G0190500 PROTEIN 143 610 - -
Seca2g03415 656 MobiDBLite consensus disorder prediction 1 22 - -
Seca2g03415 656 SMART c2hcfinal6 48 64 IPR001878 GO:0003676|GO:0008270
Seca2g03415 656 ProSiteProfiles Zinc finger GRF-type profile. 86 129 IPR010666 GO:0008270
Seca2g03415 656 Pfam GRF zinc finger 85 128 IPR010666 GO:0008270
Seca2g03415 656 Gene3D - 37 76 - -
Seca2g03415 656 ProSiteProfiles Zinc finger CCHC-type profile. 48 64 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03415 Seca-Chr2 105318784 105322550 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03415 - - vra:106766599 598.586