Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03333 ATGAATTATTTTCCAGACGAGGTAATAGAGCATGTATTTGACTACGTTGTGTCACACCGTGACCGGAACGCTCTATCTTTGGTGTGCAAAAGCTGGTATAGAATAGAGAGATGTACAAGACAGAAGGTGTTCATAGGGAACTGTTACTCTATCAGTCCTGAGAGGTTGATCCAGAGGTTTCCTGCTCTCAAATCTCTAACTTTGAAGGGAAAACCTCATTTTGCTGACTTCAGTTTGGTTCCTCATGGTTGGGGTGGTTTTGTGTATCCATGGATTGAAGCACTGGCCAAGAGTAGGGTTGGATTGGAGGAGCTTAGGCTGAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCATGAATTTCAAGTCTCTTGTTCTTGTTAGCTGTGAAGGGTTCTCCACCGATGGCCTTGCTGCTGTAGCTGCTAATTGCAGGAAATGTAGGTTTCTTAGGGAGCTGGACCTGCAAGAAAATGAAGTTGATGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGATAGCTGTACATCACTTGTCTCTCTTAATTTTGCTTGCCTTAAAGGAGATGTTAGTTTGGGAGCTCTTGAGAGACTTGTGGCCAGATCTCCTAACCTTAAGAGTTTAAGGTTAAACCGTTCTGTGCCCCTTGATGCACTGCAAAGGATAATGATGAGAGCACCTCAATTAGTGGATTTGGGTATTGGATCATTTGTCCATGATCCAGATTCAGAGACCTACACAAAGCTAAAGAATACCATTCTAAAATGCAAGTCAATAACCAGTTTGTCAGGATTTTTGGAAGTTTCTCCTCACTGCCTTGCAGCTATATATCCTATTTGCCGGAACTTAACCTCATTAAACTTGAGCTATGCAGCTGGCATTCACGGCAGTGAACTGATAAAACTAATTCGCCACTGTGGGAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTAGCTAGTACTTGTAAAGATTTGCAAGAATTGAGAGTTTTTCCATCTGTTCCATATGGAAATCCTGCAGCTGTCACAGAGAAAGGACTGGTTGCTATATCAATGGGATGCCCCAAGCTTCACTCATTGCTCTACTTCTGCCACCAGATGACAAATGCTGCTCTCATAACGGTGGCCAAGAACTGCCCGAATTTTATCCGCTTTAGGTTGTGCATCCTTGATGCAACAAAACCAGACCCTGATACAATGCAGCCACTAGATGAAGGTTTTGGGGCAATTGTGCAGTCATGCAGGCGACTGAGGCGGCTATCACTCTCTGGCCAGTTGACCGACCAAGTTTTCCTTTACATTGGAATGTATGCTGAGCAACTAGAAATGCTGTCCATTGCATTTGCTGGAGAGAGTGACAAGGGAATGCAATATGTGCTGAATGGATGCAAGAAGCTTCGCAAGCTAGAGATAAGAGATTGCCCTTTTGGTAACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACCGTCGGAGCCTGCAAGAGACTAGCTAAGAAGATGCCTAGGTTAAATGTGGAGATCTTCAATGAGCATGAACAAGTTGATTGTAGTCTGGAAGATGGGCAGAGAGTAGAGAAGATGTATTTGTATCGGACATTGGCTGGGAAGAGGAAAGATGCACCGGAATATGTATGGACTCTTTAG 1725 0.4435 MNYFPDEVIEHVFDYVVSHRDRNALSLVCKSWYRIERCTRQKVFIGNCYSISPERLIQRFPALKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKSRVGLEELRLKRMVVSDESLELLSRSFMNFKSLVLVSCEGFSTDGLAAVAANCRKCRFLRELDLQENEVDDHKGQWLSCFPDSCTSLVSLNFACLKGDVSLGALERLVARSPNLKSLRLNRSVPLDALQRIMMRAPQLVDLGIGSFVHDPDSETYTKLKNTILKCKSITSLSGFLEVSPHCLAAIYPICRNLTSLNLSYAAGIHGSELIKLIRHCGKLQRLWIMDCIGDKGLGVVASTCKDLQELRVFPSVPYGNPAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMQYVLNGCKKLRKLEIRDCPFGNMALLTDVGKYETMRSLWMSSCEVTVGACKRLAKKMPRLNVEIFNEHEQVDCSLEDGQRVEKMYLYRTLAGKRKDAPEYVWTL. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03333 574 Gene3D - 1 40 - -
Seca2g03333 574 FunFam Transport inhibitor response 1 1 40 - -
Seca2g03333 574 Pfam Transport inhibitor response 1 protein domain 61 107 IPR041101 -
Seca2g03333 574 Pfam F-box 2 41 IPR041567 -
Seca2g03333 574 CDD F-box_AtTIR1-like 1 40 - -
Seca2g03333 574 Gene3D Ribonuclease Inhibitor 41 574 IPR032675 -
Seca2g03333 574 SMART LRR_CC_2 99 123 IPR006553 -
Seca2g03333 574 SMART LRR_CC_2 428 451 IPR006553 -
Seca2g03333 574 SMART LRR_CC_2 286 311 IPR006553 -
Seca2g03333 574 SMART LRR_CC_2 477 502 IPR006553 -
Seca2g03333 574 SMART LRR_CC_2 368 392 IPR006553 -
Seca2g03333 574 SMART LRR_CC_2 124 149 IPR006553 -
Seca2g03333 574 FunFam Transport inhibitor response 1 41 574 - -
Seca2g03333 574 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 82 533 - -
Seca2g03333 574 SUPERFAMILY RNI-like 16 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03333 Seca-Chr2 101946061 101948478 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03333 - - gmx:100812516 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03333 2 101946061 101948478 Seca2g03333 2 101946061 101948478 ECH