Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03163 ATGGCTGCCTCATCCTCCATCTCCAACGTTTTCACCTTTCTCTTACCAGCAAAACCACAAGCACCCCAATTCCCATTCTCCCCTTCCCTCACTCGTTTTCCATCTCCAAAGAACCACAAACTCAGTGACAACTTGGTACCACTGGTTGCTCACAATGATCACTCTTCTTCTACTTCTTCAGACTTATCCTCTGTGATGAACCCTTCTCTTGCACATGCCAACATCCTCTTCTCCCGATCAGCCTATAATGTGCAGGTGTTTGTGGATGAAAACGAGCCTGAGGAGAGGCTGCTCAACAGGTTCAAAAGAGAGGTGTTGAGAGCAGGTGTCATCCAAGAGTGCAGGAGGAGAAGGTACTTTGAGAACAAGCAGGATGAGAAGAAACGCAGGACCCGTGATGCTGCCAAGCGTAACCGCAGAAACAGGCGGCCCCCTCAGTCGAGATCTCCAATGCAGAATAAGCAGGATGTTCCAGCAACCAAGAAGGAAGAGGATGATGATAACTGGGATCTACCTGAAGAAGACTTACTAAATTTTTGA 540 0.4796 MAASSSISNVFTFLLPAKPQAPQFPFSPSLTRFPSPKNHKLSDNLVPLVAHNDHSSSTSSDLSSVMNPSLAHANILFSRSAYNVQVFVDENEPEERLLNRFKREVLRAGVIQECRRRRYFENKQDEKKRRTRDAAKRNRRNRRPPQSRSPMQNKQDVPATKKEEDDDNWDLPEEDLLNF. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03163 179 MobiDBLite consensus disorder prediction 122 179 - -
Seca2g03163 179 PRINTS Ribosomal protein S21 family signature 87 95 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 PRINTS Ribosomal protein S21 family signature 119 129 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 PRINTS Ribosomal protein S21 family signature 95 104 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 PRINTS Ribosomal protein S21 family signature 107 117 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 175 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 Pfam Ribosomal protein S21 85 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 NCBIfam 30S ribosomal protein S21 84 140 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 Hamap 30S ribosomal protein S21 [rpsU]. 83 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Seca2g03163 179 Gene3D Ribosomal protein S8 98 136 IPR038380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03163 Seca-Chr2 95945295 95946665 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03163 - - gmx:100780245 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03163 2 95945295 95946665 Seca2g03163 2 95945295 95946665 PCT