Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03140 ATGGGAGTGACACCCAAAATTGCTCCTTCGATGCTTTCATCCGACTTCGCCAATTTGGCTTCTGAGGCTCATCGCATGCTCAAATGTGGCGCCGATTGGCTCCACATGGACATCATGTGCAGGCACTTCGTCCCCAATTTAACTATTGGCGCTCCAGTCATTGAAAGTTTGAGAAAGCACACAAAGGCATATCTGGATTGTCACCTGATGGTTACAAATCCTCTTGATTATGTTGAAACTTTGGGAAGAGCTGGTGCTTCTGGTTTTACATTTCATGTAGAGGCATCAAAAGATAACTGGAAAGAACTTATCCAAAAAATTAAGTCACATGGCATGAGGCCTGGTGTAGCACTAAAGCCTGGGACACCGATTGGAGAGGTTTATCCTCTGGTTGAAGCTGAAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGAACCTGGATTTGGAGGCCAAAAGTTTATGCCAGAGATGATGGACAAGGTACGGATACTGAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGCTTAGGGCCTTCAACCATAGAAATGGCTGCATCAGCAGGGGCAAATTGCATTGTTGCTGGAAGTTCAGTGTTTGGAGCTCCTGAGCCAGCTCAAGTAATATCCTTACTGAGGAATTCTGTTGAGAAAGCCCAGCAAACATATTGA 681 0.4493 MGVTPKIAPSMLSSDFANLASEAHRMLKCGADWLHMDIMCRHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVETLGRAGASGFTFHVEASKDNWKELIQKIKSHGMRPGVALKPGTPIGEVYPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIEMAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKAQQTY. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03140 226 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
Seca2g03140 226 Gene3D Aldolase class I 1 226 IPR013785 -
Seca2g03140 226 CDD RPE 6 216 IPR000056 GO:0005975|GO:0016857
Seca2g03140 226 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Seca2g03140 226 Pfam Ribulose-phosphate 3 epimerase family 6 203 IPR000056 GO:0005975|GO:0016857
Seca2g03140 226 SUPERFAMILY Ribulose-phoshate binding barrel 5 221 IPR011060 -
Seca2g03140 226 NCBIfam ribulose-phosphate 3-epimerase 6 216 IPR026019 GO:0004750|GO:0006098
Seca2g03140 226 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 5 224 IPR000056 GO:0005975|GO:0016857
Seca2g03140 226 FunFam Ribulose-phosphate 3-epimerase 1 226 - -
Seca2g03140 226 PIRSF RPE 1 226 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03140 Seca-Chr2 94249085 94253746 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03140 K01783 - gmx:100527490 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03140 2 94249085 94253746 Seca2g03140 2 94249085 94253746 ECH