Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03118 ATGGTTGAAGCATATTTCCAAAACGAGGATAGAGCATATGCTGCTTGGAATGGTAGTGGAAATCGTGACAGCAATAATGGCCTTCGGCTAGTCAAATCGCATAAGATCCGGAACAAAAATCCAGAGGTCAAAGCTTCCAACACATTCATTATCATTTGTGGGGATCTTCCTCCGAATGTTCATGTTAGGCTAATGCCCAGAATGGTGATTCATAGGTGTGGAGATTGTATCTTCATTAGGGTCATGGCACTTAGAAGGAGCATACATAATGCAAGTGACTTAATTTCTAACAGAAGAAAATTTCGTTGTAATTTTCTTGCAATGCAGAGAGAATCTCGCATTTCCAGTCTTCCTGATGGATTCTATAAATCTTTGCTTCCTTGTTACTCCTCAGAGCTGCAATTGCTGTTCTCTAAAAAGAAAATGAAAATACCAGATTCCCTTGAAATTGTGGAAACTCAAGGGAAGTTAGATGTGTTAGAATCTCAAACTGTTGGCAGTTCAGAGTATATAGAAACTGGTCCACAAACCCCTCCCCGGTGCCCAGATTCCCTTGTTATTGAGGAAACCCCACAGAAGTTAGTTGTCTCTGAATCTCAAACTTATTGCAGTCCAGAGCATAGAGAAACTGCTCCACAAACCCCCCCTCCAAGCCAAAATATAAAAGTTAGGTCAATGAAGCACCCGGAGAGAACTAAACTTCAAAACTCAGATAGGCCTTCAAGTCCCCATGCAAGCATAGAGATAGAGCAATCTTTGGGAATGAATGAAGTACTTAATCTGATGAAAGAGTTTAATGTAGACACTTTAAATTCCTATGGAAGTTTGGAGAGGGAGCAATGTCTGACAAAGGATGAAGATCTTAATCTAATGAGTGAGGAGATAAATTCATCTGAAACTGAGAATTCAAAATTATTAGCTGGGTGGTCTGAGCGAACCAGGAAAGTTGGTAGATACTTGCACAAGAGTTTTCTAGATCCAAGGAAACAGAGAGAGGGGGATGTTGTGAACTTTTCACAAGTTTTAGGAGGACGAGTCAGGAAAGAATCTGCAAGGATATTTTATGAAATACTGGTTTTGAAAACTACAAGTTATGTGGATGTGAAGCAAAACAAAGCTTATGGTGATATTGCAATCAAGAAACTTCCAAAATTAGATCAAACTTTTGGAGTTGATGATCCATAA 1185 0.3932 MVEAYFQNEDRAYAAWNGSGNRDSNNGLRLVKSHKIRNKNPEVKASNTFIIICGDLPPNVHVRLMPRMVIHRCGDCIFIRVMALRRSIHNASDLISNRRKFRCNFLAMQRESRISSLPDGFYKSLLPCYSSELQLLFSKKKMKIPDSLEIVETQGKLDVLESQTVGSSEYIETGPQTPPRCPDSLVIEETPQKLVVSESQTYCSPEHRETAPQTPPPSQNIKVRSMKHPERTKLQNSDRPSSPHASIEIEQSLGMNEVLNLMKEFNVDTLNSYGSLEREQCLTKDEDLNLMSEEINSSETENSKLLAGWSERTRKVGRYLHKSFLDPRKQREGDVVNFSQVLGGRVRKESARIFYEILVLKTTSYVDVKQNKAYGDIAIKKLPKLDQTFGVDDP. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03118 394 FunFam Sister chromatid cohesion 1 protein 4 312 389 - -
Seca2g03118 394 CDD Rad21_Rec8_M_AtSYN1-like 84 140 - -
Seca2g03118 394 PANTHER SCC1 / RAD21 FAMILY MEMBER 83 387 IPR039781 GO:0007062|GO:0008278
Seca2g03118 394 MobiDBLite consensus disorder prediction 198 245 - -
Seca2g03118 394 Gene3D Structural maintenance of chromosome 1. Chain E 311 389 IPR023093 -
Seca2g03118 394 SUPERFAMILY "Winged helix" DNA-binding domain 312 385 IPR036390 -
Seca2g03118 394 Pfam Conserved region of Rad21 / Rec8 like protein 332 384 IPR006909 -
Seca2g03118 394 MobiDBLite consensus disorder prediction 198 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03118 Seca-Chr2 93580004 93587925 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03118 K06670 - gmx:100810733 244.202