Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01956 ATGGCCAACATGGAACGCCGGAAAACGCTGACCATGAACTGGGACGGCCTCGGCGACGACGAGGACGACGATCATTTCTTCGAGACGTATAACCGTCTCTCCACCGCCGTTCCACAGGACTTAGCTTCTTCTTCCGACGAAGACGAAGATTATGAAGACGGCCGGCTTTCCTTCGCCTCCGCCGTCTCCTCCGTCCACTCCACCAAACACCGAAGGATGTCAATCACCGCCGCGGCAGCGCCTCCGGCTCCGAATTACGACATCTGGATGGCCGCTCCTGGATCCATCACGGAGCGGAGAAGAAGATTGCTAGGAAGCATGGGTTTGGACAACAACAAAGAGCTTCTCAAGGCCACAAGCGCCGCCATCGGCCGTGCCATCACAAAGAAGTTCGAAAACAACAATAACTCAAACCCTCCACCTCATTCAGTTTCAACCAAATCCAACGCAATTACCGTCACCGCCGTTGCCGCTTCCTCTGTTTCGCCAGAACGGAAAACAGAGCGTTCACCTGTTTCCTTCGTCATGGTTAGGTCACGTTCGGAGGGAGACATTGAGTCATTCTCCATGGAGAAATCAAGGAAGGAGGAGATGTTAGGAAAGGTTTCAAAGCAGAGGCTGATGAGAACCTCCTCAGAGATCGCCGTGCCGCGTGCTCGGCACGGTCATGGAAACCGAATCGTTATCAAAGATGCAACGGAATCGAATCGGCAACTATCATCGGCTCCAGCTGCGGCAGGTTCTGGAGTTGGAGCGTTTTTTCTGATAAAGAATTTGGACACAGGAAAAGAGTTTATCGTCAATGAATACGCTGAAGATGGAATGTGGAATCGGTTAAGTGATTTGCAGACAGGGAAACAGTTAACAATGGAGGAGTTTGAGAAAACGGTGGGTCACTCAGCGGTTGTGAAAGAGCTTATGCGACGTGCTAAAGTTGCGAGAAATGATGGATATGGGAAGAAGCTTCATTCGAGTTCTTACATATCGAGAAGTTTGAGATTGAGCAAAAGGAGAGGTGCTTCGTTGTTGAAGAACATAAAAGGTGTAGCGAGTGGGTTCGTTGGGGAGAGAGAAAGGGAGGTTGTGGTGCCGCAAGTGGCGGAGTCAAAGCAGGCTCAGCAACAAGGGAAGAACAAGTGGGTGAGGGTTAGACAGAGTGGGAAATCGCAGAAGGAGTTATCGGCTTTGCATTTGTGTCAGGAGTTTCAGGCTCATGAAGGGTGTATTTGGACCATTAAGTTCAGTTTGGATGGGCATTATTTGGCTAGTGCAGGGGAAGATAAAACGATTCATGTTTGGGAAGTGCAGGAATGTGAGGTTATGTCGTTGAAGCCTGAGGAAGGGAATCTCACTCCAATTCATCCATCGTTGCTTTCATCCATGGAACGAGGAGGAGGAGTAGAGCCTCCTCCTTTGGCAAAGAAGAAGGGGAAATTTGGAAGCAAAAGAGGGAGTGCGATTCCTGATTATGTTCATGTCCCTGAAACTGTGTTTACCCTCTCTGAGAAACCTTATTGTTCTTTCCATGGTCATTTGGATGAAGTTTTGGATTTGTCCTGGTCACAATCTCAGCTACTTCTCTCATCTTCCATGGATAAAACAGTGAGATTGTGGGACTTGGAAACTAAGACGTGCTTGAAATTCTTTGCACATAATGATTACGTAACCTGTGTGCAGTTCAACCCCATGGATGATGATTATTTCATTACTGGCTCCCTTGATGCTAAGATCAGAATGTGGAACATTCCTTCACGGCTTGTCGTGGATTGGACTGATCTCCATGAAATGGTTACTGCTGTTTCTTACACCCCTGATGGTCAAGGTGTTCTTGTTGGTACACAAAAAGGGAACTGTCGTACTTACAGCATAGAAGATTACAAATTAACTCAAACGGGCACGGTTGAGATTCGAAACAAGAAGAAATCTCAGCTGAAAAAGGTTACTGGCTTCCAGTTTGCCCCAACAAATCCATCAGAAGTGCTTGTTACTTCAGGTGATTCTAGGATAAGAGTTGTGGGGGGTTCAGAAGTTGTTCAGAAGTTTAAAGGTTTTCGAAATACAAACAGCCAAATGGCAGCTTCATTTAGTCCATTTGGAAGATATATCATAAGTGCAAGTGAAGATTCTCAAGTGTATGTCTGGAAGCATGAAGAGACTCGCAGTGCAAGCTCTGGAAAAGCCAGAAGTGTGCTTGTTACCCAGTCTCACGAGCACTTTCCATGCAAAGATGTTTCAGTAGCAATAGCTTGGCCTTGTATCATTAAGGGTGATCCACCACCAGTGTCAATGCCTAATTCCAAAAAGAATACAAAACGTTCAGTGGCATCTACAGATGAAACTGCCCCTGGTGGAAACAGCAAGAGAATGTTGCCACCTCTTCCAAAGAAAAGCAATAACCAAGCCTCAGAAAATACCCCAGGCTCACCAAAGGATGACCCAGCAGCAATTTCACGTACAGAATCTGGAATTGGAGATTCATTTGGGAACAGTAAGAAAATGTTGCCACCTCTTCCCAAGAAAAGTAATCACCAGGCCACAGATAGTGACCTCAGTTGCGTAGAAGAAGACCTTGAAGCAATATCTAGGACAGATACAGGATTAGGTGATTCATTTGCTTCAGGTTCTGCATCAATTAGGTATGGTGATTCGCCTTCTATATCTGCTGCAGGAACTCCATCAACTGGATCATGGTCTTCTAATTATTCATCATTTGATAGTAGCCAAACCTCAGCACTTCATCCTTCAGCATGGGGCTTGGTAATTGTTACAGCTGGATTTGGAGGTGAAATCAGGTGTTATCAGAATTTTGGGCTGCCTAGAAGGATAAGTAGGCAGGCCAATCTCTTTGGAAGCCCTACATAA 2862 0.4626 MANMERRKTLTMNWDGLGDDEDDDHFFETYNRLSTAVPQDLASSSDEDEDYEDGRLSFASAVSSVHSTKHRRMSITAAAAPPAPNYDIWMAAPGSITERRRRLLGSMGLDNNKELLKATSAAIGRAITKKFENNNNSNPPPHSVSTKSNAITVTAVAASSVSPERKTERSPVSFVMVRSRSEGDIESFSMEKSRKEEMLGKVSKQRLMRTSSEIAVPRARHGHGNRIVIKDATESNRQLSSAPAAAGSGVGAFFLIKNLDTGKEFIVNEYAEDGMWNRLSDLQTGKQLTMEEFEKTVGHSAVVKELMRRAKVARNDGYGKKLHSSSYISRSLRLSKRRGASLLKNIKGVASGFVGEREREVVVPQVAESKQAQQQGKNKWVRVRQSGKSQKELSALHLCQEFQAHEGCIWTIKFSLDGHYLASAGEDKTIHVWEVQECEVMSLKPEEGNLTPIHPSLLSSMERGGGVEPPPLAKKKGKFGSKRGSAIPDYVHVPETVFTLSEKPYCSFHGHLDEVLDLSWSQSQLLLSSSMDKTVRLWDLETKTCLKFFAHNDYVTCVQFNPMDDDYFITGSLDAKIRMWNIPSRLVVDWTDLHEMVTAVSYTPDGQGVLVGTQKGNCRTYSIEDYKLTQTGTVEIRNKKKSQLKKVTGFQFAPTNPSEVLVTSGDSRIRVVGGSEVVQKFKGFRNTNSQMAASFSPFGRYIISASEDSQVYVWKHEETRSASSGKARSVLVTQSHEHFPCKDVSVAIAWPCIIKGDPPPVSMPNSKKNTKRSVASTDETAPGGNSKRMLPPLPKKSNNQASENTPGSPKDDPAAISRTESGIGDSFGNSKKMLPPLPKKSNHQATDSDLSCVEEDLEAISRTDTGLGDSFASGSASIRYGDSPSISAAGTPSTGSWSSNYSSFDSSQTSALHPSAWGLVIVTAGFGGEIRCYQNFGLPRRISRQANLFGSPT. 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 548 IPR001680 GO:0005515
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 436 - -
Seca2g01956 953 MobiDBLite consensus disorder prediction 763 783 - -
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 724 IPR001680 GO:0005515
Seca2g01956 953 MobiDBLite consensus disorder prediction 792 807 - -
Seca2g01956 953 MobiDBLite consensus disorder prediction 881 900 - -
Seca2g01956 953 PRINTS G protein beta WD-40 repeat signature 568 582 IPR020472 -
Seca2g01956 953 PRINTS G protein beta WD-40 repeat signature 526 540 IPR020472 -
Seca2g01956 953 PRINTS G protein beta WD-40 repeat signature 421 435 IPR020472 -
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 542 - -
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 582 IPR001680 GO:0005515
Seca2g01956 953 PANTHER WD REPEAT DOMAIN 44 20 939 IPR040324 -
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 582 - -
Seca2g01956 953 SMART WD40_4 674 715 IPR001680 GO:0005515
Seca2g01956 953 SMART WD40_4 501 539 IPR001680 GO:0005515
Seca2g01956 953 SMART WD40_4 395 434 IPR001680 GO:0005515
Seca2g01956 953 SMART WD40_4 542 581 IPR001680 GO:0005515
Seca2g01956 953 SMART WD40_4 637 673 IPR001680 GO:0005515
Seca2g01956 953 SMART WD40_4 583 622 IPR001680 GO:0005515
Seca2g01956 953 FunFam WD repeat-containing protein 44 489 756 - -
Seca2g01956 953 ProSitePatterns Trp-Asp (WD) repeats signature. 421 435 IPR019775 -
Seca2g01956 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Seca2g01956 953 Pfam WD domain, G-beta repeat 693 715 IPR001680 GO:0005515
Seca2g01956 953 Pfam WD domain, G-beta repeat 545 581 IPR001680 GO:0005515
Seca2g01956 953 Pfam WD domain, G-beta repeat 400 433 IPR001680 GO:0005515
Seca2g01956 953 Pfam WD domain, G-beta repeat 505 539 IPR001680 GO:0005515
Seca2g01956 953 ProSitePatterns Trp-Asp (WD) repeats signature. 526 540 IPR019775 -
Seca2g01956 953 Gene3D - 487 755 IPR015943 GO:0005515
Seca2g01956 953 MobiDBLite consensus disorder prediction 757 850 - -
Seca2g01956 953 Gene3D - 366 456 IPR015943 GO:0005515
Seca2g01956 953 SUPERFAMILY WD40 repeat-like 396 718 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01956 Seca-Chr2 41587585 41592134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g01956 547 714 Miscellaneous Gene Families AT5G08390 23.669 8.46e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01956 K20241 - gmx:100782200 1293.49