Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca2g01140 | ATGCTTCGACGTCCAGCTGAGGTTCTTGGGCAAGTCCATGTTGCTACTAGAATGCGACCTGTGGATGCTTTGTGGGCATTGGCCTATGGTGGTCCCTTGTCTTTGCTTCCCTTGACTATAAGCAATGTACACGAGGATACTCTGGAACCACTGCAAGGGAATTTTCCTCTGTCCTCAGCCACCACATCTCTTGCTGCCCCAATATTTAGAATTATATCTATGGCTATTGAACATCCGAGGAACAATGAAGAGTTGTCTCGTGGTAGAGGGCCTGAGGTTCTGTCAAAAATATTGAATTATCTTCTCCAAACTTTATCTTCGCTTGATGTTAGAAAGCATGATGGGGTAAGAGATGAGGAACTTGTTGCTGCTGTTGTCTCCGTTTGTCAATCGCAAAAGATCAATCATACACTTAAAGTGCAACTCTTCACTACACTACTGTTAGATTTAAAAATTTGGAGTTTGTGTAGTTACGGAATACAAAAGAAGCTACTATCATCACTTGCAGACATGGTTTTCACTGAGTCAACAGTGATGCGAGATGCCAATGCCATTCAGATGCTTCTTGATGGCTGCAGAAGATGTTATTGGACTGTTCCTGAGATTGACTCGGTGAATACTTTTTCTCTAGCTGGGGCAACACGTCCTGTGGGTGAAATCAATGCTTTGGTTGATGAGCTCCTGGTGGTAGTTGAACTTTTAATAGTGGCTGCACCTCCTTCATTGGTCTCAGATGATGTTCGATGTTTACTTGGATTCATGGTTGACTGTCCACAACCTAATCAGGTTGCTAGGGTGTTGCATCTCTTCTACAGGTTGGTTGTCCAGCCAAATACATCTAGAGCTCACACATTTACTGAAGAATTTCTAGCATGTGGTGGGGTGGAAACCCTTCTTGTTCTGCTCCAGAGGGAAGCCAAAGCTGGAGATAGTAGTGTTCTGGAATCATTGTCAAAGAATCCTGAACTTCAAAAAGCTGAGACTGATGGTAGTAATGAATTTACAGAAGGAAGTCATGATGATGAAGGATCAGAGGAGAAAAGTGAAGCCATCTTACTAGACAATGACCAAAGTTATCAATCTGTTGACAGTGGCAATAGCCCTGATCTTAGTTCTCCTGATGTGAACAATGACAGGATGACATTTACCTCTGAAACTCCTTCTGTCAAGAATCTGGGTGGCATAAGTCTATCCATCAGTGCTGACAGTGCTAGAAAAAATGTTTACAATGTTGATAAAAGTGATGGCATTGTTGTTGGGATCATAGGTCTCTTAGGTGCTTTAGTAGCTTCAGGACAGCTGAGATTCAGTTCCCGTGCTGGTCCTGATACAACAAGCAACCTTTTTGGTGTTGGACTCCATGACAGGGGTGGTTCCATGTTTGAAGACAAGGTTTCTCTTCTACTTTACGCTTTACAGAAGGCTTTTCAAGCAGCACCCAACAGGCTAATGACTAACAATGTTTACACAGCTTTGTTGGCTGCCTCGATTAATGCCTCTTCTTCAGAGGATGGTCTGAACTTCTATGATTCTGGTCATCGCTTTGAGCATTCACAACTTTTATTGGTGCTTTTGCGTTCTCTTCCATATGCGCCCAGGCCACTGCAGAGCAGAGCTCTACAGGATCTTCTATTTTTGGCTTGCAGTCATCCTGAAAATAGAAGCAGTATGACAAACATGGAGGAATGGCCTGAATGGATTTTGGAAGTCCTGATCTCAAACTATGAGTTGGGTCCAAGCAAATCGTCTGATTCAACAACTGTTGGAGACATAGAAGACCTTATACATAACTTCCTTATTATCATGCTAGAGCACTCAATGCGACAAAAGGATGGATGGAAGGATATTGAAGCGACAATTCATTGCGCAGAATGGCTTTCTATTGTTGGTGGATCTAGCACAGGAGAACAGCGAGTAAGACGTGAAGAAGCGTTACCTATATTTAAAAGGAGACTCTTAGGTGGCTTGCTGGACTTTGCAGCTAGAGAATTGCAGGTTCAGACTCAAATTATTGCTGCAGCAGCTGCTGGTGTAGCAGCTGAGGGTCTGTCACCAAAAGATGCTAAGGCTGAGGCTGAGAACGCTGCCCAGTTGTCTGTGGCTTTAGTAGAGAATGCCATTGTGATACTTATGCTTGTAGAAGATCATTTACGGTTGCAGAGCAAGCAATCCTCTTCTTCACGTGCTGCAGATGGTTCCCCATCTCCATTTTCTCCTGTGTATTCAATCAATAATCGCTCAAGTACATTGTCAACAATTGATGAGTCCACAGAAGTTACTGACGATCAAAGATCACTATCTGGTGACTCAGGGGGAATCCCTCTAGATGTCCTTTCTTCAATGGCTGATGAAAGTGGTCAGATCCCTACTTCAGTGATGGAAAGGATTACAGCTGCTGCAGCAGCTGAGCCTTATGAATCCGTTTCATGTGCCTTTGTGTCATATGGGTCCTGTACTAAGGATTTAGCTGATGGATGGAAATATCGAAGTCGTTTATGGTATGGCGTTGGCCTTCCACAGAATCCAGCTCCATTTGGTGGTGGTGGTAGTGGATGGGATTTTTGGAAGTCTGCTTTGGAGAAAGATGCCAATGGCAACTGGATTGAGCTTCCTTTGGTGAAGAAGTCTGTGGCAATGCTCCAAGCATTATTGCTAGATGAGTCTGGACTCGGTGGTGGTCTTGGTATAGGTGGAGGATCAGGTACTGGAATGGGAGGAATGGCTGCATTGTACCAGCTATTAGACAGTGACCAGCCATTCTTGTGCATGCTTCGAATGGTTCTTCTATCGATGAGGGAAGATGATGATGGTGAAGATCATATGCTGAAGAGAAATACAAGTATTGAGGATGCGGTGTCTGAAGGAAGAAAACCACGATCAGCACTTTTGTGGAGTGTTCTCTCACCTGTTCTCAACATGCCAATTTCTGATTCTAAGAGGCAAAGAGTCTTGGTAGCATCTTGTGTGCTTTATTCCGAGGTATATCATGCTGTCAGCAAAGACGAAAAGCCTCTTCGTAAACAGTACCTTGAGGCTATTTTACCACCATTTGTTGCTGTTTTAAGGAGGTGGCGACCCCTTTTGGCTGGCATTCATGAGCTTGCTACTGCTGATGGTTTGAATCCTCTTGTTGCGGATGATCGTGCATTAGCTGCTGATTCCCTGCCAATCGAGGCTGCTCTTGCTATGATATCTCCAGCCTGGGCTGCAGCTTTTGCATCTCCACCTGCTGCAATGGCATTGGCGATGGTTGCGGCTGGTGCTTCAGGTGGCGAAAGCCAAGCTCCTGGAACAACTTCCCAGCTTAAGCGTGATACATCACTGATGGAACGCAAACAGACTAGGCTTCAGACATTTTCAAGCTTTCAAAGACCTTTGGAAGTCCCTAACAAAACACCACCTCTTCCGAAGGACAAAGCTGCTGCAAAAGCTGCTGCTTTGGCAGCTGCTCGTGATCTTGAGCGATTTGCAAAAATTGGTTCGGGAAGAGGTCTTAGTGCCGTTGCAATGGCTACATCTGCACAGAGAAGGAGTGCTAGTGATATGGAGCGGGTTAAGAGGTGGAATATTTCTGAAGCAATGGGAGTTGCCTGGATGGAATGTTTGCAGCCAGTTGATACAAAGTCGGTGTATGGGAAAGATTTTAATGCCTTTTCATATAAATATATTGCTGTTCTTGTTGCCAGTTTTGCCCTAGCAAGGAATATGCAACGGTCTGAGATTGACAGGCGTGCTTATGTAGATGTAGTTGCTCGACATCGAATTAGTACTGGGGCCCGTGCTTGGCGTAAACTTATTCACCAGTTAATAGAGATGAGAAGTCTTTTCGGGCCTTCTGCAGATCATTTATACAGTCCACTTTGTGTTTTCTGGAAGCTAGATTTGATGGAAAGTTCTTCCAGGATGAGAAGATGTTTGAGGAGGAATTACAGAGGATCTGATCATCTAGGTTCTGCAGCCAATTATGAGGATTATGCTGGGGAGAAAATTGACCAGAGCACTCCAATTTTGTCAGCGGAAGCAATCTCATTGGAGGCAGTCAATGAAGATGAAGAACAGGTGGAAATTGAGAATTTAGATGCTAGGGTTGATGATATTGAAGATAAAGGAGACAATCAGCCTAGACTTTCTGAAGCAGCTGAGCAAACTGTACAGGCATCTTTAGAATCCAATTCTACTCAACTTGCAACTGATGAACACCTTGTCCAGAGTCCTTCAGCCATTGCACCTGGGTATGTTCCAAGTGAACTTGATGAAAGAATTGTTCTCGAGTTACCATCATCAATGGTCCGACCACTTAAGGTCATACGGGGAACATTTCAAGTAACCAGTAGGAGGATAAATTTTATAGTTGATAACAGTGAGATCAGCACTACAATGGATGCTTTGCATTCCAGTTTTGAGGCAGGGAACCTAGAAAAGGATCGTAGCTGGTTAATGTCATCTCTTCATCAAATATATAGCCGGAGGTACCTCCTTAGAAGAAGTGCTTTGGAGCTATTTATGGTGGACCGATCAAACTTCTTCTTTGATTTCGGGAGTAGCGAAGGGCGAAGAAATGCATATCGAGCAATTGTTCAAGCACGGCCTCCTCATTTAAACAATATATATTTGGCTACTCAGAGGCCTGAACAACTTTTGAAAAGAATTCAACTTATGGAGCGATGGGCTAGATGGGAGATCAGCAATTTTGAATATCTAATGCAACTCAATACACTGGCTGGGCGTAGTTATAATGATATTACCCAGTATCCGGTATTCCCCTGGATTCTGTCTGATTACAGTTCAGAGAACTTGGATCTTTCTAATCCTTCTTCTTATCGAGACCTTTCAAAGCCTGTTGGTGCACTGAATCCAGATCGTCTGAAGAGATTTCAAGAGAGATATACTAGCTTTGATGATCCAGTCATCCCCAAATTCCATTATGGATCACACTACTCAAGTGCAGGAACAGTTTTGTATTATCTTGTTAGGGTTGAACCATTCACTACCCTTGCTATCCAACTGCAAGGAGGTAAATTTGACCATGCAGATCGGATGTTTTCTGATATTTCTGCTACTTGGAATGGAGTTCTTGAGGACATGAGTGATGTGAAGGAATTGGTTCCTGAGCTATTTTACCTACCTGAGGTCCTCACAAATGAAAATTCAATTGATTTTGGCACAACACAATTGGGAGGGAAGCTTGATACCGTAAAACTCCCTGCTTGGGCTGAAAATCCAGTTGATTTTATTCATAAGCATCGGAAGGCTCTGGAGAGTGAATACGTATCTGCTCATTTACATGAGTGGATTGACCTCATATTTGGGTATAAACAACGTGGCAAAGAAGCTGTTACAGCAAATAATGTTTTCTTTTATATTACCTATGAAGGGACAGTGGATATTGATAAAATCTCCGACCCAGTACAACAGCGTGCCACGCAAGATCAGATTGCATATTTTGGACAAACACCATCCCAACTTCTGACTGTTCCTCACTTAAAGAAAATGCCATTAGCAGAAGTTCTGCATTTGCAGACAATATTCCGCAACCCAAAAGAAGTCAAGCCATATGCTGTTCCATCCCCTGAACGTTGCAATCTTCCTGCGGCTGCCATTCATGCATCTTCAGATATGGTTGTGGTTGTTGATATGAATGCACCGGCAGCTCATGTTGCTCAACACAAGTGGCAACCCAATACACCTGATGGCCATGGTACTCCTTTCCTTTTTCAACATAGAAAACCTACATCAGGCGCTGCTGGTGGTACACTTATGCGCATGTTCAAAGCGCCTGCCACATCTGGTGAAGAGTGGCAATTCCCCCAAGCGGTAGCATTTTCTGTCTCTGGAATTAGAAGCCAAGCTATCGTTTCTATAACGTGTGACAAAGAAATTATTACTGGTGGGCATGCCGATAATAGTATTAGGCTAATATCCTCAGATGGAGCTAAAACCTTAGAAACAGCATATGGACATTGTGCTCCTGTAACTTGCCTTGGTCTTTCACCTGATAGTAACTACCTAGTGACAGGATCCCGAGATACAACAGTATTACTCTGGAGAATACATAGGGCACTTGTATCTCGTTCAAATGGCATATCAGAACATTCCACTGGGACAGGCACATCGTCTTCAACCAGTAATAGCTCATCGCACTTGATTGAAAAGGATCGGAGACGTAGAATTGAGGGTCCTATACAGGTACTTCGGGGGCACCACAGTGAAATACTCAGTTGTTGTGTTAACTCAGATCTTGGAATAGTTGTTTCTTGCTCCCATTCATCAGATGTCCTCTTGCACTCTATAAGAAGGGGACGTTTAATTAGAAGACTCGATGGTGTGGAGGCCCATATTGTCTGCCTTTCCTCTGAAGGGGTTGTGATGACTTGGAATGAATCACTACATACTCTAAGTACCTTTACTCTCAATGGTGCTCTGATTGCAAAAGCACAATTCTCCTTCTTTTGCAGTATCAGTTGCATAGAAATTTCTGTTGATGGGACGAGTGCTTTGGTTGGAATTAATTCTCTAGAAAATGGTGTTGTTGATTTTGATTCAGAACCAGAAGAAACTTATGAAAGCAACAGAGTAGATGTTCCATCACCATCCATTTGCTTCCTGGATATGCACACTCTGGAGGTATTTCATGTGTTAAGGCTGGGAGAAGGACAGGATATCACAGCTCTGGCTCTAAACAAGGATAACGCAAATCTTTTGGTTTCAACTTTGGATAAACAATTGATAATCTTCACGGATCCAGCTTTAAGCTTGAAAGTGGTAGATCAAATGCTCAAGCTTGGCTGGGAAGGTGATGGGCTTCAGCCTCTCATTAAATCATAG | 6825 | 0.4338 | MLRRPAEVLGQVHVATRMRPVDALWALAYGGPLSLLPLTISNVHEDTLEPLQGNFPLSSATTSLAAPIFRIISMAIEHPRNNEELSRGRGPEVLSKILNYLLQTLSSLDVRKHDGVRDEELVAAVVSVCQSQKINHTLKVQLFTTLLLDLKIWSLCSYGIQKKLLSSLADMVFTESTVMRDANAIQMLLDGCRRCYWTVPEIDSVNTFSLAGATRPVGEINALVDELLVVVELLIVAAPPSLVSDDVRCLLGFMVDCPQPNQVARVLHLFYRLVVQPNTSRAHTFTEEFLACGGVETLLVLLQREAKAGDSSVLESLSKNPELQKAETDGSNEFTEGSHDDEGSEEKSEAILLDNDQSYQSVDSGNSPDLSSPDVNNDRMTFTSETPSVKNLGGISLSISADSARKNVYNVDKSDGIVVGIIGLLGALVASGQLRFSSRAGPDTTSNLFGVGLHDRGGSMFEDKVSLLLYALQKAFQAAPNRLMTNNVYTALLAASINASSSEDGLNFYDSGHRFEHSQLLLVLLRSLPYAPRPLQSRALQDLLFLACSHPENRSSMTNMEEWPEWILEVLISNYELGPSKSSDSTTVGDIEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRVRREEALPIFKRRLLGGLLDFAARELQVQTQIIAAAAAGVAAEGLSPKDAKAEAENAAQLSVALVENAIVILMLVEDHLRLQSKQSSSSRAADGSPSPFSPVYSINNRSSTLSTIDESTEVTDDQRSLSGDSGGIPLDVLSSMADESGQIPTSVMERITAAAAAEPYESVSCAFVSYGSCTKDLADGWKYRSRLWYGVGLPQNPAPFGGGGSGWDFWKSALEKDANGNWIELPLVKKSVAMLQALLLDESGLGGGLGIGGGSGTGMGGMAALYQLLDSDQPFLCMLRMVLLSMREDDDGEDHMLKRNTSIEDAVSEGRKPRSALLWSVLSPVLNMPISDSKRQRVLVASCVLYSEVYHAVSKDEKPLRKQYLEAILPPFVAVLRRWRPLLAGIHELATADGLNPLVADDRALAADSLPIEAALAMISPAWAAAFASPPAAMALAMVAAGASGGESQAPGTTSQLKRDTSLMERKQTRLQTFSSFQRPLEVPNKTPPLPKDKAAAKAAALAAARDLERFAKIGSGRGLSAVAMATSAQRRSASDMERVKRWNISEAMGVAWMECLQPVDTKSVYGKDFNAFSYKYIAVLVASFALARNMQRSEIDRRAYVDVVARHRISTGARAWRKLIHQLIEMRSLFGPSADHLYSPLCVFWKLDLMESSSRMRRCLRRNYRGSDHLGSAANYEDYAGEKIDQSTPILSAEAISLEAVNEDEEQVEIENLDARVDDIEDKGDNQPRLSEAAEQTVQASLESNSTQLATDEHLVQSPSAIAPGYVPSELDERIVLELPSSMVRPLKVIRGTFQVTSRRINFIVDNSEISTTMDALHSSFEAGNLEKDRSWLMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGSSEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLKRIQLMERWARWEISNFEYLMQLNTLAGRSYNDITQYPVFPWILSDYSSENLDLSNPSSYRDLSKPVGALNPDRLKRFQERYTSFDDPVIPKFHYGSHYSSAGTVLYYLVRVEPFTTLAIQLQGGKFDHADRMFSDISATWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGGKLDTVKLPAWAENPVDFIHKHRKALESEYVSAHLHEWIDLIFGYKQRGKEAVTANNVFFYITYEGTVDIDKISDPVQQRATQDQIAYFGQTPSQLLTVPHLKKMPLAEVLHLQTIFRNPKEVKPYAVPSPERCNLPAAAIHASSDMVVVVDMNAPAAHVAQHKWQPNTPDGHGTPFLFQHRKPTSGAAGGTLMRMFKAPATSGEEWQFPQAVAFSVSGIRSQAIVSITCDKEIITGGHADNSIRLISSDGAKTLETAYGHCAPVTCLGLSPDSNYLVTGSRDTTVLLWRIHRALVSRSNGISEHSTGTGTSSSTSNSSSHLIEKDRRRRIEGPIQVLRGHHSEILSCCVNSDLGIVVSCSHSSDVLLHSIRRGRLIRRLDGVEAHIVCLSSEGVVMTWNESLHTLSTFTLNGALIAKAQFSFFCSISCIEISVDGTSALVGINSLENGVVDFDSEPEETYESNRVDVPSPSICFLDMHTLEVFHVLRLGEGQDITALALNKDNANLLVSTLDKQLIIFTDPALSLKVVDQMLKLGWEGDGLQPLIKS. | 2275 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca2g01140 | 2274 | PANTHER | BEIGE/BEACH-RELATED | 24 | 2248 | - | - | |
| Seca2g01140 | 2274 | SUPERFAMILY | PH domain-like | 1419 | 1526 | - | - | |
| Seca2g01140 | 2274 | Pfam | PH domain associated with Beige/BEACH | 1428 | 1526 | IPR023362 | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 2027 | 2046 | - | - | |
| Seca2g01140 | 2274 | FunFam | neurobeachin isoform X1 | 1543 | 1830 | - | - | |
| Seca2g01140 | 2274 | Coils | Coil | 1349 | 1369 | - | - | |
| Seca2g01140 | 2274 | ProSiteProfiles | BEACH domain profile. | 1541 | 1830 | IPR000409 | - | |
| Seca2g01140 | 2274 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 1984 | 2017 | - | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 751 | 770 | - | - | |
| Seca2g01140 | 2274 | Gene3D | BEACH domain | 1542 | 1830 | IPR036372 | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 2027 | 2051 | - | - | |
| Seca2g01140 | 2274 | ProSiteProfiles | BEACH-type PH domain profile. | 1416 | 1526 | IPR023362 | - | |
| Seca2g01140 | 2274 | Gene3D | - | 1419 | 1525 | IPR011993 | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 313 | 331 | - | - | |
| Seca2g01140 | 2274 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 1984 | 2025 | IPR001680 | GO:0005515 | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 723 | 743 | - | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 313 | 377 | - | - | |
| Seca2g01140 | 2274 | CDD | PH_BEACH | 1419 | 1529 | IPR023362 | - | |
| Seca2g01140 | 2274 | SMART | Beach_2 | 1553 | 1830 | IPR000409 | - | |
| Seca2g01140 | 2274 | SMART | WD40_4 | 2206 | 2246 | IPR001680 | GO:0005515 | |
| Seca2g01140 | 2274 | SMART | WD40_4 | 2057 | 2096 | IPR001680 | GO:0005515 | |
| Seca2g01140 | 2274 | SMART | WD40_4 | 1977 | 2016 | IPR001680 | GO:0005515 | |
| Seca2g01140 | 2274 | CDD | Beach | 1553 | 1830 | IPR000409 | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 353 | 377 | - | - | |
| Seca2g01140 | 2274 | Gene3D | - | 1937 | 2256 | IPR015943 | GO:0005515 | |
| Seca2g01140 | 2274 | Pfam | Neurobeachin/BDCP, DUF4704 alpha solenoid region | 479 | 623 | IPR031570 | - | |
| Seca2g01140 | 2274 | Pfam | Neurobeachin/BDCP, DUF4704 alpha solenoid region | 4 | 308 | IPR031570 | - | |
| Seca2g01140 | 2274 | Pfam | Neurobeachin beta propeller domain | 1949 | 2162 | IPR046851 | - | |
| Seca2g01140 | 2274 | Pfam | Beige/BEACH domain | 1554 | 1829 | IPR000409 | - | |
| Seca2g01140 | 2274 | SUPERFAMILY | BEACH domain | 1540 | 1830 | IPR036372 | - | |
| Seca2g01140 | 2274 | MobiDBLite | consensus disorder prediction | 332 | 352 | - | - | |
| Seca2g01140 | 2274 | SUPERFAMILY | WD40 repeat-like | 1954 | 2245 | IPR036322 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca2g01140 | Seca-Chr2 | 18315254 | 18351929 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca2g01140 | - | - | gmx:100782030 | 3881.26 |