Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g01021 ATGGTGGTTGATGAGTGTGACTCTACCATGGGATGTGATGAAGATCATGATTACCAACCTCCATGTCGCTATAACATAGTTGATGCCTCCAAAGCTGTGTGGGAAGCATTGGGTGTGCCTCAAGATCAATGGGCTCAGAGTTGCCGCCCAAGTGGAAGAATCATAGGAAAGGAAGCCCCTCCTGGACAATGCAACCAAGAGAATGATTCTGATTGTTGTGAACAAGGCAAAGTGTACACAACTTATGAATGTTCACCACCTGTGTCTGCTCAAACCAGAGCATATCTCACTCTAAACAGTTTCCAAAAGGGTGGAGATGGAGGTGGTCCTTCAGAATGTGACAATCAGTACCATTCTGATGACACTCCAGTGGTTGCACTTTCCACAGGATGGTTCAACAACAAGAGCAGGTGTCTCAACAAAATTACCATAAGTGCCAATGGAAGAAGTGTGGTGGCAATGGTTGTTGATGAGTGTGACTCTACCATGGGATGTGATGAAGACCATGACTACCAACCTCCATGTCGCAACAACATTGTTGATGCTTCCAAAGCTGTGTGGGAAGCATTGGGTGTCCCACAAGATCAATGGGGTGATTGCATGTTCTCTAAAGCCCAAAACTGTCGCCCAAGTGGTAGAATCATAGGAAAGAAATCCCCTCCTGGACAATGCAACCAGGAGAATGACTCTGATTGTTGTGAACAAGGCAAAGTGTACACAACTTATGAATGTTCCCCACCTGTGTCTACTCACACTAAGGCATATCTCACACTCAACAGTTTCCAAAAGGGTGGAGATGGAGGTGGTCCTTCAGAATGTGACAATCAGTACCATTCTGATGACACTCCAGTGGTTGCACTTTCCACAGGATGGTTCAACAACAAGAGCAGGTGCCTTAACAAAATTACCATAAGTGCCAATGGAAGAAGTGTGGAGGCAATGGTGGTTGATGAGTGTGACTCTACCATGGGATGTGATGAAGATCATGATTACCAACCTCCTTGTGCCAACAACATTGTTGATGCCTCCAAAGCTGTGTGGAAAGCATTGGGTGTGCCTCAAGATCAATGGGGTGGCCTGGACATTACATGGTCTGATGCTTGA 1104 0.4592 MVVDECDSTMGCDEDHDYQPPCRYNIVDASKAVWEALGVPQDQWAQSCRPSGRIIGKEAPPGQCNQENDSDCCEQGKVYTTYECSPPVSAQTRAYLTLNSFQKGGDGGGPSECDNQYHSDDTPVVALSTGWFNNKSRCLNKITISANGRSVVAMVVDECDSTMGCDEDHDYQPPCRNNIVDASKAVWEALGVPQDQWGDCMFSKAQNCRPSGRIIGKKSPPGQCNQENDSDCCEQGKVYTTYECSPPVSTHTKAYLTLNSFQKGGDGGGPSECDNQYHSDDTPVVALSTGWFNNKSRCLNKITISANGRSVEAMVVDECDSTMGCDEDHDYQPPCANNIVDASKAVWKALGVPQDQWGGLDITWSDA. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g01021 367 CDD DPBB_kiwellin-like 79 196 - -
Seca2g01021 367 CDD DPBB_kiwellin-like 239 366 - -
Seca2g01021 367 Gene3D - 256 366 IPR036908 -
Seca2g01021 367 Gene3D - 97 203 IPR036908 -
Seca2g01021 367 PANTHER RIPENING-RELATED PROTEIN 2-RELATED 1 45 IPR039271 -
Seca2g01021 367 SUPERFAMILY Barwin-like endoglucanases 84 193 IPR036908 -
Seca2g01021 367 SUPERFAMILY Barwin-like endoglucanases 246 365 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g01021 Seca-Chr2 16587542 16609014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g01021 - - gmx:100785431 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g01021 2 16587542 16609014 Seca2g01021 2 16587542 16609014 ECH