Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00872 ATGGCAGCTGCTTCTCCAATGGCTAGCCAACTCAAGTCCAGCTTCACTAGGCCTCTAGTCACACCCAAGGGCCTCTCTGGTGCCTCTCCACTCCAACTCTTGCCTTCTAGAAGGCAATTTACCTTCACTGTTAAGGCCATCCAATCTGAGAAGCAGCCAACCTATCAAGTGATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCCTTGAAACTCCAGTTACATCAAGCCCTTTGATCGCTTGGTACCTATCCAACTTGCCAGCATATAGAACAGCAGTGAACCCATTACTAAGGGGGGTTGAGGTGGGCTTAGCCCACGGGTTTCTTCTTGTGGGCCCATTTGTGAAGGCCGGGCCTTTGAGGAACACCCCTTATGCAGGAGGTGCGGGCTCTCTGGCTGCAGCTGGGCTTGTGGTGATCCTTAGCCTTTGCCTCACCATCTATGGAGTTGCATCCTTCAATGAAGGGGATGCATCAACTGCACCATCCTTGACCTTGACGGGCCGCAAGAAGGTGCCTGATCAGCTCCAAACATCAGAAGGTTGGGCCAAGTTCACTGGTGGGTTCTTCTTTGGAGGCATTTCTGGTGTTATTTGGGCTTACTTCCTCCTTTATGTCTTAGACCTTCCATACTACTTCAAGTGA 648 0.5062 MAAASPMASQLKSSFTRPLVTPKGLSGASPLQLLPSRRQFTFTVKAIQSEKQPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTPYAGGAGSLAAAGLVVILSLCLTIYGVASFNEGDASTAPSLTLTGRKKVPDQLQTSEGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYFK. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00872 215 SUPERFAMILY Photosystem I reaction center subunit XI, PsaL 58 214 IPR036592 GO:0009522|GO:0009538|GO:0015979
Seca2g00872 215 Pfam Photosystem I reaction centre subunit XI 57 209 IPR003757 GO:0009522|GO:0009538|GO:0015979
Seca2g00872 215 FunFam Photosystem I reaction center subunit XI 52 215 - -
Seca2g00872 215 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC 2 215 IPR022980 -
Seca2g00872 215 Gene3D Photosystem I PsaL, reaction centre subunit XI 52 215 IPR036592 GO:0009522|GO:0009538|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00872 Seca-Chr2 13511630 13513075 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00872 K02699 - gmx:100500317 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00872 2 13511630 13513075 Seca2g00872 2 13511630 13513075 ECH