Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00836 ATGCTATCGCTGAACCCCATGTTCGTGGTCTTCATTTTCGTGTTCCTTTTGTTGCTATTTTTATTCAAATTCGCCAACGCTTATGGCGATTTCACTTTGATGTCCAAGAAGCAACCAAAACGACAAGAAATCGAAGATAAGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATTGGGGAGATTCTAGCTAAACAGTTTGCAAGTTTAGGGGCAAAGCTAATTATCTCTGCAAGGAATGAAGCTGAGCTAAACCGAGTAAGGACAGAGCTGAAAGGTAAGCATGCACCTGATGAAGTCAAGATTTTACCATTGGATTTAGCGTCTGGAGAGGATTCTCTTAGGAAGGCTGTTGAGAAAGCAGAATCTTTTTTTCCGGATTCTGGTGTTGATTATATGATCCATAATGCAGCTTTCGAGCGTCCTGTAAGTGACTGA 435 0.4184 MLSLNPMFVVFIFVFLLLLFLFKFANAYGDFTLMSKKQPKRQEIEDKVVWITGASRGIGEILAKQFASLGAKLIISARNEAELNRVRTELKGKHAPDEVKILPLDLASGEDSLRKAVEKAESFFPDSGVDYMIHNAAFERPVSD. 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00836 144 Pfam short chain dehydrogenase 47 140 IPR002347 -
Seca2g00836 144 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 140 IPR036291 -
Seca2g00836 144 Gene3D - 27 143 - -
Seca2g00836 144 PRINTS Glucose/ribitol dehydrogenase family signature 48 65 IPR002347 -
Seca2g00836 144 PRINTS Glucose/ribitol dehydrogenase family signature 127 138 IPR002347 -
Seca2g00836 144 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 7 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00836 Seca-Chr2 12580394 12581720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g00836 34 142 Acyl Lipid Metabolism Gene Families AT1G62610 33.898 9.60e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00836 K11165 - gmx:100795991 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00836 2 12580394 12581720 Seca2g00836 2 12580394 12581720 ECH