Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g00556 ATGAAGTTTGGGAAAGAATTTGTGTCACAAATGGTGCCAGAATGGCAAGAAGCATACATGGATTACAACTCTTTAAAAGCTATTCTGAAAGACATTTTACTGTTTAGGCAGCAGCAAAATGAATCAGCACCAATGGCATCCACCCCAAAAGGTTCTCTCAAGAGAAGGTTAACTCTCTACAGAGCTTTTAGTGGACTTAATGGTCAACAAAGAGGGTCTCCAAGGAAGAGTGAAGATGAAGTTATACTTGTTCGTGCAGAGGAGGGTGAAGGCTCAGAAGGGTTGTATCAAACCATGTTCCTTAAGCCTTCTGAACAAGGTACAGAACGAGATCTTGAGTTTTTTAAGAAACTTGATTTTGAGTTTAACAAGGTCAATAACTTCTACAAGAAAATGGTGAAGGAAGTTGTTGAGGAGGCAGAGGAGTTGAGTAAGCAAATGAATGCTCTTATTGCTCTCAGAATAAAGGTAGATAAGGTGGGGTTTAGAAATCATGCTAGCATTAGGAATGAGACCTCAATTTCATCTTCCATGAAGCATCATGCCAGACCAGGTCACTCACATGTGCACATGGATGTGATTCATGAAGTTGAGATGAGCAATGAAATGAATTTGGACAATGGAAGTGGAAATTATGTGGAGGGATTTAAACCAGCTTCAATAGAGATCCTTGATCATGTAAAGATCAATGTGACCACTCCAGAAACTCCTATATCAACTCTAAAAGGGCTTCTTCTCTTAAGCTCAAAATCTGACCAGTCATTTAGCAACAAAGAGCTGAGGAAAGCAGAGAAACAAATTAGCATAGCCTTAAAGGAATTCTATCATAAGCTTCGGCTTCTAAAAAGCTATAGCTTCATAAACTTGTTGGCATTCTCAAAAATCATGAAGAAGTATGATAAGGTTAGTTCAAGGAATGCATCAAAGGATTACTTAAAGATGGTGGATAGTTCTTATGTTGGCAGCTCAGATGAGGTTAATAGGCTCATGGAAAGGGTGGAACATGCCTTCATTAAGCACTTTGCAAATGGGAATCACAGGAAAGGAATGAACACATTGAGACCAGCTGCAAAGAGGGAAAGGCATAGAATTACATTCTTATTGGGGTTGTTTACTGGCTGCTCAATTGCCCTCATTGTGGCACTTATTATACTCATACACGCAAGAAATATTCTATATAGTGAGGGTCGTACTAGATATATGGAGAACATATTTCCTCTTTATAGTCTCTTTGGATACATAGTCTTACATATGATCATGTACTCTGCAAATGTATATTTCTGGAGGCGATTTAAAATCAACTACCCCTTTATATTTGGCTTCAAGGAAGGAACAGAGTTGGGGTATAGAGAAGTCTTTCTTCTTAGCTCTGGCCTTGCAGTACTTTCATTGGCTGCTGTCCTCTCAAACTTGGATATGGAGATGGACCAAAGAACAAAAAGTTTCTCAGCATTTACAGAATTAGTCCCTTTAGGCCTTGTCATTGTTCTGCTTCTTATAACATTTTGTCCATTCAACATCATATATAAGTCCAGCCAGTTCTTCCTTATTCAATGTGCATTTCATTGCCTTTGTGCTCCTCTTTACAAGGTCAACCTCCCAGATAATTTCTTGGCAGACCAGCTTACCAGCCAGGTGCAGGCCTTTAGAAGTTTGGAATTCTATGTTTGCTACTATTTCTGGGGAAACTTCAAGACCAGATCAAACAAGTGCCTTGAAAGTGACATTTATAAGACATTTTATTTAATTGTAGCTATTATTCCATTCTGGATCCGTTGTCTCCAGTGCCTTAGAAGGTTATTACTTGAAGAAAGAAATATAATGCATGGGCTAAATGGGCTAAAATATATCTCAACAATAGCTGCACTTGCCATGAGGACTACTTATGAGTTACACAAAGGGATGGTTTGGAAAATTCTGGCTGCAGCTTCTTCTGGTGTTGCAACAATTGTTAATACATATTGGGATATTGTCATAGATTGGGGTTTGTTAAGAAGGAATTCAAGAAACCCATGGTTGAGAGATAAACTCTCTGTACCAAACAAAAGTGTATATTTTGTTGCTATGGTGATGAATGTTATTCTACGACTTGCTTGGATGCAATCTGTTTTAGGCATTAGAGAAGCTCCTTTCTTGCATAGAACAGCCTTGACTGCTCTTGTAGCATGCTTGGAGATCCTTCGCCGTGGCATTTGGAATTTTTTCAGGTACTTTTCTTCTACATATTCAATAACCTTTCTAGCAATGTTGGAGAATGAGCACTTGAACAATGTTGGAAAGTATAGGGCATTCAAGTCAGTACCCCTGCCTTTTAATTATCAAGATGATGAAGAAGAATAG 2340 0.3859 MKFGKEFVSQMVPEWQEAYMDYNSLKAILKDILLFRQQQNESAPMASTPKGSLKRRLTLYRAFSGLNGQQRGSPRKSEDEVILVRAEEGEGSEGLYQTMFLKPSEQGTERDLEFFKKLDFEFNKVNNFYKKMVKEVVEEAEELSKQMNALIALRIKVDKVGFRNHASIRNETSISSSMKHHARPGHSHVHMDVIHEVEMSNEMNLDNGSGNYVEGFKPASIEILDHVKINVTTPETPISTLKGLLLLSSKSDQSFSNKELRKAEKQISIALKEFYHKLRLLKSYSFINLLAFSKIMKKYDKVSSRNASKDYLKMVDSSYVGSSDEVNRLMERVEHAFIKHFANGNHRKGMNTLRPAAKRERHRITFLLGLFTGCSIALIVALIILIHARNILYSEGRTRYMENIFPLYSLFGYIVLHMIMYSANVYFWRRFKINYPFIFGFKEGTELGYREVFLLSSGLAVLSLAAVLSNLDMEMDQRTKSFSAFTELVPLGLVIVLLLITFCPFNIIYKSSQFFLIQCAFHCLCAPLYKVNLPDNFLADQLTSQVQAFRSLEFYVCYYFWGNFKTRSNKCLESDIYKTFYLIVAIIPFWIRCLQCLRRLLLEERNIMHGLNGLKYISTIAALAMRTTYELHKGMVWKILAAASSGVATIVNTYWDIVIDWGLLRRNSRNPWLRDKLSVPNKSVYFVAMVMNVILRLAWMQSVLGIREAPFLHRTALTALVACLEILRRGIWNFFRYFSSTYSITFLAMLENEHLNNVGKYRAFKSVPLPFNYQDDEEE. 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g00556 779 ProSiteProfiles EXS domain profile. 572 779 IPR004342 GO:0016020
Seca2g00556 779 Coils Coil 126 153 - -
Seca2g00556 779 CDD SPX_PHO1_like 2 309 IPR034092 -
Seca2g00556 779 Pfam SPX domain 1 315 IPR004331 -
Seca2g00556 779 Pfam EXS family 405 736 IPR004342 GO:0016020
Seca2g00556 779 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 776 - -
Seca2g00556 779 ProSiteProfiles SPX domain profile. 1 313 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g00556 Seca-Chr2 7791946 7797191 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g00556 - - gmx:100795104 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g00556 2 7791946 7797191 Seca2g00556 2 7791946 7797191 ECH