Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06998 ATGCCCACTGCCAATTTCTTCCTCTCTTTCCTCACTTTCTCTCTCCTCACATTTTCCGTCGCCGCCCGTCCCTTCGTCCTTGTCCTCTCCCAGGAAGACTTCAAGGACGACGCCCCCGCCGATCCCGACTCCGCCGCCGAGTGGGACGAATTCGGCGACTCTGACGCTCACAAGTCCGAAGAGGATCTCGACCCCGGCTCATGGCGCCCCATCTTCGAGCCTTCCACCACCGGGGAACCCCAACCCCAATCCCAATCCCAATCCGAGTCCCTCTACTACTCCGGCGTCTCCAAGCTCATGTCCGGGGACGCCAGGGTAATGGAGGAGGGCGCCGGGGAGATCGAGGCCGCAGCTGAATCGGGGTACCCGGCGGCGCAGTCTGTGTTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGAGGAGCAAAGGAAAGGCTTTTCTGTATCATCACTTTGCTGCCGAGGGTGGCAATATGCAATCCAAGATGGCTCTCGCTTATACCTACACGCGCCAAGATATGTTTGATAAAGCGGTTAAGCTGTATGCTGAATTAGCAGAAGTGGCTGTGAATAGTTTTTTGATTTCCAAAGACTCCCCTGTTATTGAACCCGTTAGGCTTCACAATGGAGCTGAAGAGAACAAAGAAGCTCTCAGAAAATCCAAAGGGGAAGAGGATGAGGACTTTCAGATTCTGGAGTATCAAGCACAGAAAGGGAATGCCGCTGCCATGTACAAAGTTGGCCTCTTTTACTACTTCGGCCTTCGAGGATTGAGGCGTGACCATTCCAAGGCACTCTCCTGGTTCTTGAAAGCCGTCGAGAAGGGTGAGCCGCGCTCTATGGAACTTCTTGGAGAGATCTATGCTAGGGGAGCAGGTGTTGAGAGAAACTACACTAAAGCCTTCGAATGGCTTACGCTTGCATCTAAACACCACCTCTATTCTGCTTATAATGGGATGGGCTATTTGTACGTCAAAGGCTATGGAGTCGACAAAAAGAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGATAACGAAGAGGTTGGTGGGCACTATAACTTGGGTGTCATGTATCTCAAGGGGATAGGAGTGAAAAGAGATGTGAAGTTGGCATGTAAGTTCTTCATAGTGGCTGCTAACCATGGTCAACCAAAGGCATTCTACCAGCTGGCAAAGATTTTCCATATTGGTGTTGGTTTCAAGAAGAATATTCCCTTGGCTACTGCCCTGTACAAACTAGTTGCAGAACGAGGTCCATGGAGTTCCCTGTCTAGATGGGCATTAGAATCATACTTAAAAGGTGATGTTGGTAAGGCATTTATGCTGTATTCAAGAATGGCTGAGATGGGTTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGAAGCATGTGCATGGGTGAATCTGGATTTTGTACTGATGCAGAAAGGCATCAGCGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGGTATGTGGTTTTGGGATGAATTAG 1575 0.4921 MPTANFFLSFLTFSLLTFSVAARPFVLVLSQEDFKDDAPADPDSAAEWDEFGDSDAHKSEEDLDPGSWRPIFEPSTTGEPQPQSQSQSESLYYSGVSKLMSGDARVMEEGAGEIEAAAESGYPAAQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYTYTRQDMFDKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAADNEEVGGHYNLGVMYLKGIGVKRDVKLACKFFIVAANHGQPKAFYQLAKIFHIGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDVGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRVCGFGMN. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06998 524 MobiDBLite consensus disorder prediction 50 67 - -
Seca12g06998 524 Gene3D Tetratricopeptide repeat domain 432 521 IPR011990 GO:0005515
Seca12g06998 524 Gene3D Tetratricopeptide repeat domain 79 198 IPR011990 GO:0005515
Seca12g06998 524 SUPERFAMILY HCP-like 332 517 - -
Seca12g06998 524 MobiDBLite consensus disorder prediction 35 89 - -
Seca12g06998 524 Gene3D Tetratricopeptide repeat domain 204 315 IPR011990 GO:0005515
Seca12g06998 524 SMART sel1 351 386 IPR006597 -
Seca12g06998 524 SMART sel1 314 350 IPR006597 -
Seca12g06998 524 SMART sel1 387 422 IPR006597 -
Seca12g06998 524 SMART sel1 241 277 IPR006597 -
Seca12g06998 524 SMART sel1 123 158 IPR006597 -
Seca12g06998 524 SMART sel1 278 313 IPR006597 -
Seca12g06998 524 SUPERFAMILY HCP-like 222 348 - -
Seca12g06998 524 SUPERFAMILY HCP-like 114 188 - -
Seca12g06998 524 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 206 317 - -
Seca12g06998 524 Gene3D Tetratricopeptide repeat domain 316 431 IPR011990 GO:0005515
Seca12g06998 524 Pfam Sel1 repeat 315 348 IPR006597 -
Seca12g06998 524 Pfam Sel1 repeat 436 454 IPR006597 -
Seca12g06998 524 Pfam Sel1 repeat 123 158 IPR006597 -
Seca12g06998 524 Pfam Sel1 repeat 279 311 IPR006597 -
Seca12g06998 524 Pfam Sel1 repeat 354 385 IPR006597 -
Seca12g06998 524 Pfam Sel1 repeat 241 276 IPR006597 -
Seca12g06998 524 MobiDBLite consensus disorder prediction 74 89 - -
Seca12g06998 524 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 5 518 IPR044623 GO:0030433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06998 Seca-Chr12 161939812 161946321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06998 K14026 - gmx:100787823 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06998 12 161939812 161946321 Seca12g06998 12 161939812 161946321 ECH