Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06997 ATGGGAAAAAGGAAAGTGGGGTCTTTTGTTCCGTTACGAGATGTACAGAACTATCACAAGGGGAGCAAAGTGAACATCATCGCCGTTATTCTTGATATCGGCTTTCCCAAGCGTACATATGGCCCTGATTTCTGCTGTCCCATCAGGGTAATTGATGAAACTCATCACGAAATGGCCATGGCCATTAACCTTTTTGCTAACCCTGTAGAAAGACTTCCCCATATTGCTGCCGCTGGAGATATAATTCAGCTTTGCCCAATCATGATAGGAAAGGTGGATGATTGGGAAGTAAATGCTTCTTTCAATGATGCATGGTACACTGGCTGTTTTGCCTTATACAAAGGGGAAGACGATGATGATAATGATATAGTACCTTATCTTGCTTCTTCAAATTTTCACCCCACAAATGAGGACAAACTGTCTGTAGACAAGCTTAGAAAATGGCTGGTCAATTTTCAGTTTCATGGAGATTCGAGTGATTATCCGATGTTAAGAGAAATCAGGCAAGGTTTCTTTAATTTGGCATGCAAGATACTTCATTACTGGAAGGCTGAAAACGGTGATCGGTTTATCTTTGTTTGGGATGGAACTGATACCCCACCAAACGCCATATGTGCAACGCTGGAAGATGAAGTGAATTTCCCACTTCATTTACAACTTCAATATTTGCCTTTGCAAAGAGAGTTGTTTTATAATTTACCTACTGTTGGATCAATCCTGGGGCTGAAATTAGATCCAGCCATTCAGGGAAATGAATTCGACTTTCTAAATCCCGGCAAATGGGTCAAGCTTCACAATATAAAGTTTGAAGTGGATACACACGCAGGACTATGGCAAGGTGTTTTGACCGCTCATTCAAAGCTTCGGTATGCACGAAATGAGTGTCTCGTTATAGAACGAAAAAGGTTGTCTGTTGAGCGGAATATTTCGGAATTTGGAAGAATTCCTTGTTGGATTCCAGAGTCTTTATGTATTACCGAGGTCAATAATGAGGATGCAGAATATGGTACTTTAATGGATGTCCTCAGCCATTCAGAGGTGGCAGCCAAATTCAAGTGTCTTGTTCGGGTGGTAGCAGCATTGCCATGCCGTGCTGAAGAGCTTTGGTCCCCTGATGGGACATATAGAATGCGGCTGACCATAGAGGATCCAACAGCCAGAATCCATACTTTCGTAGTTGCTGAGGATGCGGTTAGAACAGATTTTAGCTTCAGGGCCTTTATTTTATGCATGCAAAGCTTCTACTTTGATAATATTAAATTCTACTATCCAGGCTGTTATTTTTTCTAA 1290 0.4147 MGKRKVGSFVPLRDVQNYHKGSKVNIIAVILDIGFPKRTYGPDFCCPIRVIDETHHEMAMAINLFANPVERLPHIAAAGDIIQLCPIMIGKVDDWEVNASFNDAWYTGCFALYKGEDDDDNDIVPYLASSNFHPTNEDKLSVDKLRKWLVNFQFHGDSSDYPMLREIRQGFFNLACKILHYWKAENGDRFIFVWDGTDTPPNAICATLEDEVNFPLHLQLQYLPLQRELFYNLPTVGSILGLKLDPAIQGNEFDFLNPGKWVKLHNIKFEVDTHAGLWQGVLTAHSKLRYARNECLVIERKRLSVERNISEFGRIPCWIPESLCITEVNNEDAEYGTLMDVLSHSEVAAKFKCLVRVVAALPCRAEELWSPDGTYRMRLTIEDPTARIHTFVVAEDAVRTDFSFRAFILCMQSFYFDNIKFYYPGCYFF. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06997 429 SUPERFAMILY Nucleic acid-binding proteins 170 273 IPR012340 -
Seca12g06997 429 Gene3D - 8 157 IPR012340 -
Seca12g06997 429 PANTHER PROTECTION OF TELOMERES 1 9 398 IPR028389 GO:0000723|GO:0043047
Seca12g06997 429 SMART Telo_bind_a_2 9 150 IPR011564 GO:0000723|GO:0000781|GO:0003677
Seca12g06997 429 Pfam Telomeric single stranded DNA binding POT1/CDC13 9 149 IPR011564 GO:0000723|GO:0000781|GO:0003677
Seca12g06997 429 SUPERFAMILY Nucleic acid-binding proteins 18 152 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06997 Seca-Chr12 161934144 161939237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06997 - - gsj:114413738 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06997 12 161934144 161939237 Seca12g06997 12 161934144 161939237 ECH