Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06970 ATGAGCCATGACCTGGTGGAGACTTACTCATGTATGCCTTCGACGGAGCGTGGCCGTGGGATTCTGATCTCCGGCGACCCCAAGTCCAACAGGATGCTCTACACCAACGGCAGATCCGTCGTTATTATGAACCTTCATAACCCCCTTCAAGTCTCCGTCTATGGGGACCACGCCTACCCTGCCACCGTCGCCCGATTTTCCCCCAACGGCGAGTGGGTCGCCTCTGCTGACGTGTCCGGCACCGTCAGGCTCTGGGGAACCCGCAACGACTTCGTTTTGAAGAAAGAGTTCCGCGTCCTCTCCGGTCGGATCGACGACCTTCACTGGTCCCCCGACGGCCTCAGGATCGTTGCCTGCGGCGATGCCAAGGGAAACTCCTTTGTCCGCGCTTTTATGTGGGATTCAGGGACTAATGTTGGTGAATTTGATGGTCACTCGAGGCGAGTTTTAAGTTGTTCATATAAACCGACAAGACCTTTTCGCATTGTCACCTGTGGAGAGGATTTTCTGGTGAACTTTTATGAAGGACCCCCGTTTAGATTTAAGCAATCTCACAGGGATCATTCAAATTTTGTCAATTGTGTAAGATATTCTCCAGATGGCAGTAAATTTTTAAGTGTAGGTTCTGACAAAAAGGGTATCATATTTGATGGAAAGACTGGAGAGAAGATCGGTGAGTTGTCTTCTGAAGGTGGCCATACTGGCAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAGCAAGTGCTGACTGTATCTGCTGACAAGTGTGCAAAAGTATGGGACATATCTGAGGACAACAATGGAAAGGTGAAGAAAACATTGACTTGTCCTGGCTCTGGTGGAGTGGAAGACATGCTTGTGGGATGCCTATGGTTGAATGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATATCTATATTTTTAGCAAGTGATCTTGATAAAGCCCCGACATCATTTTCTGGACATATGAAAAATGTTTCCTCCTTAACAATTCTTAGAAGTAACCCTAGAGTGCTCTTGTCCAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGTAAATTACAAAGGAAGGAGAATTCTCAAATCAAATACATAGCAGCTATAGAGGATGAGATTGTTACATCTGGATTCGATAATAAGATACGGCGAGTTTCTTTACATGGGGATCAGTGTGGAGATACTGAAGCCATTGATATAGGAAGTCAATCAAAGGATTTTAGTGTTGCAATTCAATCTCCTGATCTTGCTCTGGTTTCAATTGATTCAGGAGTTGTCATGCTGCGTGGTACAAAAGTTGTTTCAACCATTAATCTTGGGTTTACTGTTTCAGCATCTGTTGTCTCTCCTGATGGAAGTGAAGCCATTATTGGCGGACAGGATGGTAAGTTGCACATATATTCTATTTCTGGTGATACACTTGTAGAAGAGGCTGTCCTGGAGAAACATCGGGGTGCAATTAGTGTCATACGGTATTCTCCAGACTTTTCAATGTTTGCATCAGGGGATGTCAATCGTGAGGCTGTAGTGTGGGACCGTGCCTCCCAAGATATGAAGCTTAAGAACATGTTGTACCATACTGCACGGATAAACTGCTTAGCTTGGTCCCCTGATAGCCATAGGATTGCTACAGGATCACTTGACACATGCGTCATCATATATGAAATTGACCAGCCTGCATCTAATAGAATTACCATAAAGGGTGCTCACTTAGGCGGGGTTTATGGGTTAGTATTCACTGATGAGTATAACTTGGTTAGCTCAGGTGAGGATGCTTTTATCCGTGTCTGGAGGATAACCCCTCCATGA 1833 0.4512 MSHDLVETYSCMPSTERGRGILISGDPKSNRMLYTNGRSVVIMNLHNPLQVSVYGDHAYPATVARFSPNGEWVASADVSGTVRLWGTRNDFVLKKEFRVLSGRIDDLHWSPDGLRIVACGDAKGNSFVRAFMWDSGTNVGEFDGHSRRVLSCSYKPTRPFRIVTCGEDFLVNFYEGPPFRFKQSHRDHSNFVNCVRYSPDGSKFLSVGSDKKGIIFDGKTGEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKCAKVWDISEDNNGKVKKTLTCPGSGGVEDMLVGCLWLNDYLVTVSLGGTISIFLASDLDKAPTSFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSGKLQRKENSQIKYIAAIEDEIVTSGFDNKIRRVSLHGDQCGDTEAIDIGSQSKDFSVAIQSPDLALVSIDSGVVMLRGTKVVSTINLGFTVSASVVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAISVIRYSPDFSMFASGDVNREAVVWDRASQDMKLKNMLYHTARINCLAWSPDSHRIATGSLDTCVIIYEIDQPASNRITIKGAHLGGVYGLVFTDEYNLVSSGEDAFIRVWRITPP. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06970 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 607 - -
Seca12g06970 610 Gene3D - 9 607 IPR015943 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Seca12g06970 610 Pfam WD domain, G-beta repeat 64 85 IPR001680 GO:0005515
Seca12g06970 610 Pfam WD domain, G-beta repeat 227 262 IPR001680 GO:0005515
Seca12g06970 610 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Seca12g06970 610 Pfam WD domain, G-beta repeat 184 212 IPR001680 GO:0005515
Seca12g06970 610 Gene3D - 12 338 IPR015943 GO:0005515
Seca12g06970 610 CDD WD40 57 350 - -
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 264 - -
Seca12g06970 610 FunFam Actin-interacting protein 1 339 607 - -
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Seca12g06970 610 FunFam Actin-interacting protein 1 12 338 - -
Seca12g06970 610 SUPERFAMILY WD40 repeat-like 26 353 IPR036322 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Seca12g06970 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Seca12g06970 610 SUPERFAMILY WD40 repeat-like 379 607 IPR036322 GO:0005515
Seca12g06970 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 135 175 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 47 86 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 178 217 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 268 310 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 90 134 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Seca12g06970 610 SMART WD40_4 220 262 IPR001680 GO:0005515
Seca12g06970 610 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06970 Seca-Chr12 161687030 161692392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06970 116 294 Miscellaneous Gene Families AT5G08390 26.816 6.31e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06970 K24736 - gmx:100794702 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06970 12 161687030 161692392 Seca12g06970 12 161687030 161692392 ECH